Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3045 ATGTGCAGTGATTCAAAAAGTAAACTTTCTTCCCCAAACCTCGTGATGGAGAGTAATCTTCAGAAGCAGAATCTAGATGGTCTCTACAACTTCTCAGTTTTGCTTGAGTTGTCTGCATCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGATGAAAAGGGCTTAGATGTCAACGAGGCAGGCTTTTGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCCGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACTAAGGTGCTCAAATATATTCTCGAGGCAGGAAGTGTTGATGTGAACAGGGTCTGTGGTTCTGATAGGGCCGCTGCTCTCCATTGTGCTGTTGCTGGGGGTTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATGCTCTGATGCCAGTGGAAATAAGCCGGTTGATCTGATTGCTCCTGCCGTTGGTTCTTCGTCCAAATCGCGAAGGAAGGCTATGGAGTTGTTTCTCAGGGGTGGGGGAAGAGATGAACTCATGAGCCAGGAGATGGAGCTACAGATGTTCTCTGTTCCTTTCTCATCAAAAGAAGGTtcagagaaaaaagaaggaagcgATAAGAAAGAATATCCTGTTGATATATCGTTGCCTGACATAAACAACGGTATATATGGAACAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACGGAGTGTCCGTTTGTTCATCCAGGGGAGAATGCAAGGAGGAGGGACCCACGGAAATACCCTTATAGCTGTGTTCCTTGCCCGGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACTAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGCTTCGCCCTGTGTATGTTTCCACTGGATCAGCTATGCCTTCACCAAAATCCTACTCAGCTAGTGGACTTGACATGACAGCTATGAGCCCGTTGACTCTGAGTTCCTCATCTTTGCCTATGCCAACTGTTTCAACCCCACCCATGTCCCCCTTGGCAGCAGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTTACTCCACCGACGTTGCAGCTCCCAGGTAGCCGATTGAAGACTACTTTGAGTGCCAGGGATCTGGATCTGGAGATGGAACTGTTTGGTCTAGAAAGCCCTGCTcgtcaacaacaacaacagcagcagcagcagcaattGATAGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCCGGAGCAAGGAGTTCAACAGGATCGGTGATTTGAATCCAACTAACCTTGATGACCTGTTAGCATCTGCTGATCCTTCTGTATTATCTCAACTACATGGACTTTCTGTGCAACCTTCAACACCCACACAGTTGCAGCAATCTCCAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCAAGTTATCCATCCAACATTCCTTCCTCTCCCGTGAGAAAGCCCACAGCATTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCCTTCGCAAAGCGAAGCCAGAGTTTTATTGACCGTGGAGCTGCAACCCACCATCTTGGGCTGTCTCCAGCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGCGTAAATGGAGATGAGCTGAACAAGCTAAGGAAATCTGCTTCATTTGGGTTCAGAAATCATGGGGTAACTGCATCCCCCGTAGCGCAGCCAGAACATGTTGAGCCTGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAGTTCTGATTTATTTGGTGCTGAGAAGCAACAATATGATCTCAGTAAAGAGATGCTTTCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2067 0.4659 MCSDSKSKLSSPNLVMESNLQKQNLDGLYNFSVLLELSASDDFEAFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTKVLKYILEAGSVDVNRVCGSDRAAALHCAVAGGSESSLEIVKLLLDAGADAECSDASGNKPVDLIAPAVGSSSKSRRKAMELFLRGGGRDELMSQEMELQMFSVPFSSKEGSEKKEGSDKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYVSTGSAMPSPKSYSASGLDMTAMSPLTLSSSSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPTLQLPGSRLKTTLSARDLDLEMELFGLESPARQQQQQQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLASADPSVLSQLHGLSVQPSTPTQLQQSPSGLQMRQNMNHLRASYPSNIPSSPVRKPTAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSPASNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNHGVTASPVAQPEHVEPDVSWVHSLVKDVPSESSDLFGAEKQQYDLSKEMLSPWVEQLYIEQEQMVA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3045 688 Pfam Ankyrin repeats (3 copies) 74 144 IPR002110 GO:0005515
Ssu6g3045 688 Gene3D - 273 334 - -
Ssu6g3045 688 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Ssu6g3045 688 SUPERFAMILY Ankyrin repeat 27 154 IPR036770 -
Ssu6g3045 688 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Ssu6g3045 688 SMART ANK_2a 111 143 IPR002110 GO:0005515
Ssu6g3045 688 SMART ANK_2a 76 106 IPR002110 GO:0005515
Ssu6g3045 688 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Ssu6g3045 688 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Ssu6g3045 688 MobiDBLite consensus disorder prediction 369 388 - -
Ssu6g3045 688 Gene3D - 32 173 IPR036770 -
Ssu6g3045 688 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Ssu6g3045 688 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Ssu6g3045 688 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 20 687 - -
Ssu6g3045 688 PANTHER UNKEMPT FAMILY MEMBER 20 687 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3045 Ssu-Chr6 69732065 69734131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3045 29 683 C2H2 Transcription Factor Family AT5G12850 39.636 9.98e-146 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g3045 Ank_2 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3045 - - gmx:100783376 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3045 6 69732065 69734131 Ssu6g3045 6 69732065 69734131 ECH