Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3040 ATGGCTGTCTCCAACGGCGTCGAAGCAGTGTTAGAGTTTCTGAGGAAGAATGGCTTGTCGGAAGCAGAGTCTGCGCTTCGAGAAGACATCATCGAGAACACTGACCTCGGAAACTTCGACTACGAGAAGTTCTTCTTCCCCATGGTCCCCCCGCCGCCGCCGGTCAGAGTCCGATCCTTCTCCCGGCCGTCGGAGCTCGCCGCCGCCGACAGCTCCAAATCGAGCTCCGATGAGTTCGTCAGCATCGGCTCCTCCGCTTCTCGTGTTTCTTCTGCAGAATTCATAAATCCATATGGAATCCGTTCCTCGTCTCAGACTCAGAATGATTCCGAGTCTTCATCTGAAAGATTATCTCAATTTGGCACAGCACGTGATTATCACGATTTCGATATGCAGAATGAACCGTATTGGTATAATGAGAAGGATGATGACTATTTCATGACTCCTAGTTTTGAAGGGCCGGATTTCTTTGCGTGCCAAAGTGAAGATAAGTTTGTCATGACCGCAGAAACGGAAAATCAACATGACAATTTGGAACTTGATTACAACTATGAAGAATCTCAGTTAGAGGGGAATAGTAATGGTGGTTATATGGACAAGGCATGCCTTTATAATCACTCATCTGTAGGGGATGGAAATGTGACTTATTCAGAGGGCTATAGTAATGTTGACAACAAAGACCAGTTTGAAGGGGAATTAGACGGCAAGGCTGAGAAACACACTGTTGCCTGTAGTTGTGAAATTCCATTTTGCAAAAGCAGTCCAGGTTCAAGAGATTCTTGCAGTTTGGATCCTACAAACTTCAGCTACCCTAATTTGAAGGAAATCCGTCTGAATGATTTTCGTTTGAAGGTTGTTGGGGACTTTAACTCTTTTGATTCTACTTCAGAGCTAACTATGAATCAAAGTTTTGACTATTACACTAGAAATGACAGCAGTAAGGAGTACAAGGGTCCCTATGACTTAACTATCAAAGTTACTGAAAATGATCTACCGATTAGACTTGACACCTATAAAGCACGAGATGGTGGAGAATTAGCAGAAGAGTGCCAAGATCCAGAGATTGCTGCAGATGGAGAGGATACTACTGATGATGAGCTCTTAAAGTATACTCAAGAGGAAGAATACGAAGTATTTGATCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTGCCCATTGTGCTAAATACAGTCTTGGCTGGAAGGTATTATGTAACAGAATATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGATCTTCAGACAGGAATAGATGTTTGCTTgaagattattaaaaatgacaaagacTTTTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGCATGACCCAGCAGATGAACACCACATTTTGCGCCTTTATGACTATTTCTACCACCAGGAGCATTTATTCATTGTAACTGAACTTCTGCGAGCAAACTTATATGAATTTCAGAAATTCAACCAAGAGTCTGGAGGGGAAGCATATTTTACATTGAACAGATTGCAGCTCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATAGTTTGGGGATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAAtcaaaagttacaaaagatGTGAGATAAAGGTTATTGATCTTGGAAGCAGCTGCTTCCTAACAGACAATCTGTGCTTATATGTACAATCCCGATCCTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCTCTCGGCTGTATCTTGGCTGAGCTATGCTCTGGTGAAGTGCTGTTTCCAAATGATGCAGTTGTGATGATTCTAGCACGCATGATTGGAATGCTTGGTCCTATTGATATGGAGATGTTGGTGAAAGGGCAAGAAACGCACAAGTACTTCACCAAagaatatgatatttattatgtaaatgaGGAGACTGATCAACTGGAGTACATAATTCCAGAAGAGTCATCATTGGAGCACCACCTACAGGTTACTGATACTATGTTTATCGACTTTGTCAGATACTTGCTTAGCATCAACCCCAAAAGAAGGCCTACTGCAAGACAGGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAG 2151 0.41 MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVRVRSFSRPSELAAADSSKSSSDEFVSIGSSASRVSSAEFINPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDDDYFMTPSFEGPDFFACQSEDKFVMTAETENQHDNLELDYNYEESQLEGNSNGGYMDKACLYNHSSVGDGNVTYSEGYSNVDNKDQFEGELDGKAEKHTVACSCEIPFCKSSPGSRDSCSLDPTNFSYPNLKEIRLNDFRLKVVGDFNSFDSTSELTMNQSFDYYTRNDSSKEYKGPYDLTIKVTENDLPIRLDTYKARDGGELAEECQDPEIAADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYVTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKHDPADEHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLNRLQLITRQCLEALQYLHSLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFLTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARMIGMLGPIDMEMLVKGQETHKYFTKEYDIYYVNEETDQLEYIIPEESSLEHHLQVTDTMFIDFVRYLLSINPKRRPTARQALKHPWLSYVY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3040 716 PANTHER DUAL SPECIFICITY PROTEIN KINASE 8 716 - -
Ssu6g3040 716 SMART serkin_6 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3040 716 PANTHER HYPOTHETICAL SER-THR PROTEIN KINASE-RELATED 8 716 - -
Ssu6g3040 716 Gene3D Transferase(Phosphotransferase) domain 1 464 712 - -
Ssu6g3040 716 SUPERFAMILY Protein kinase-like (PK-like) 399 713 IPR011009 -
Ssu6g3040 716 MobiDBLite consensus disorder prediction 100 125 - -
Ssu6g3040 716 MobiDBLite consensus disorder prediction 100 120 - -
Ssu6g3040 716 Pfam Protein kinase domain 412 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3040 716 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3040 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Ssu6g3040 716 CDD PKc_DYRK_like 410 712 - -
Ssu6g3040 716 Gene3D Phosphorylase Kinase; domain 1 405 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3040 Ssu-Chr6 69624439 69628755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3040 407 707 MAP Kinase Gene Family AT5G19010 32.399 1.60e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Ssu6g3040 Pkinase 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3040 - - gmx:100783988 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3040 6 69624439 69628755 Ssu6g3040 6 69624439 69628755 ECH