Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3025 ATGCTGTACATGACGCCAGCAACAATTGGTCTTCCTTTGAGTTCAGAGAGTGATAAACTGGCTTTACTTGCTTTGAAGCAGAAGCTTACCAATGGAGTGCCTAATGCTTTTCCATCATGGAACGAGTCTTTGCATTTCTGTGAGTGGCAAGGTGTTACATGCGGTCACCGCCACATGAGGGTCACTGTCTTGCACTTGGAAAATCAAAACTGGGGTGGTACTCTTGGACCACACTTGGGAAATCTAACCTTCCTCAGAAGGCTCATTCTTTCCAACTTCAACTTGCACGGCGAAATTCCCACACAAGTTGGTCGACTAAAGAGGTTGCAGGTTCTTGACTTGAGCCATAACAATCTCCATGGTAAGATTCCTATACATCTTACTAACTGCTCTAAACTTGACGTAATTAACTTGTTGTACAATAAACTCTCTGGGAAAGTTCCTTCATGGTTTGGAATTGGATCTATGACGCGGCTTAAGTATGGAGTAGGTGTCCAAGTATCACCAAAAGGAGATATCTACAGCTACGGAATTCTTCTGTTGGAGATGCTCACAGGAATGAAACCCACAGATAACATGTTTGATGAGGATCTAAGCCTACACAAATGCTGTCAGATGGCTATTGCAGAAAGAATCACTGAGATAGTAGATTCACGTTTGCTTGCTCCAATTACTGAAGAAGGAACAAGGGTCATGGAAACCAACATTAGGGAGTGTCTGGTATCCTTTGCCAGGATTGGAGTTGCATGTTCTGCAGAATTGTCCGTTCAGCGAATGGACACAAAAGATGTGATAGTGGAAATGGCTCTAACTCTAATCATGTTTCTCCTCAGTGTAGTTTCACAAACCATGGTGTACATGACGCCATGTACAGTTGGTCTTGCTTTAAGTTCAGAGAATGATAAGCTGGCCTTACTTGCTTTGAAGCAAAAGCTTACCGATGACATGCCTAATGCTCTTCCATCCTGGAACGAGTCTTTGCATTTCTGTGAGTGGGAGGGTGTTACATGCGGTCACCGCCACATGAGGGTCTCTGCCTTGCACTTGGAAAATCAAAACTGGGGTGGTACTCTTGGACCACCCTTGGGAAATCTAACCTTCCTCAGAAGGCTCAGTCTTTCCAACATCAACTTGCATGGCGAAATTCCCACACAAGTTGGTCGACTGAAGAGGTTGCAGGTTCTTGACTTGAGCCACAACAATCTCAATGGTGAGATTCCTATACAACTTGCTAACTGCTCTAATCTTCAGGTAATTAACTTGTTGTACAATAAACTCACTGGAAAAGTTCCCTCATGGTTTGGAATTGGATCCATGACACAGCTTACTAAGTTGCTTCTTGGTGCCAATGATCTAATTGGTACTATCCCACCTTCCTTGGGGAATCTTTCATCCCTCCAAAATATTACACTTGCACGAAATCATTTGGAAGGAAGTATACCTCATCGTTTGGGTCGGTTATCAAATTTGAAAGAGTTGAATCTTGGTTTAAATAGTTTGTCAGGTGTAGTCCCTGATTCTCTTTACAACCTTTcgaatattcaaatttttgttcTCGGGAAAAACCAGTTATGTGGTACACTTCCATCAAATATGCATCTTGCTTTTCCAAATCTTCGAGTATTCTTCGTTGGATGGAACCGCTTCAATGGAACTTTCCCATCTTCCATATCCAACATTACCGGATTGCAAGCGTTTGATATCTCCTCAAATGGTTTTAATGGACCAATTCCTCCCACTTTGGGAAGCTTAAACAAACTTAAGAGGTTTAGCATTGCTTATAATAGTTTTGGAAGTGGGAGAGCTCAAGATTTGGATTTCCTTTCCTCATTAACCAATTGTACTCAATTGCACATACTTCTTTTGGATAACAATGAATTTGGTGGTGTGTTGCCAGATCTTATTGGCAATTTTTCTACCAATCTCACTTCGCTTAGTATGGGGAATAATCAAATATCTGGAATGATACCTGAAGGAATTGGACAGCTAATCGGTTTAACTAACTTCGTTATGGTACATAATTACCTGGAGGGAACTATTCCAGATTCAATTGGAAAGCTTAAAAATCTAGTAAGATTCGCCCTGCAAGGAAACAAATTTTCTGGTAATATTCCTAATGCCATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCACACCAATAAATTCGAAGGAAGCATTCCATTAAGCCTCAAATACTGCACCCGCATGCAGTCATTTGGTGTTGCTGACAACAACTTGAGTGGTGATATCCCTAATCAAACATTTGGCAATCTAGAAGGTTTGATAAATCTTGACTTATCCAACAACTCTTTCACTGGTTCCATTCCTTTAGAGTTTGGACACTTGAAGCACCTTTCCATATTATATCTAAACGAAAACAAGTTGTCTGGTGAAATTCCCCCAGAACTTGGCGCTTGTTCCGCATTAACAGAGCTTGTGCTGGAGAGAAACTTCTTCGGTGGAAGCATACCTTCGTCCTTGGGCTCTTTAATATCCCTCGAAATCCTAGACCTTTCCAACAACAACTTCTCTAGCACAATCCCTGGTGAACTACAAAATCTGAGTTTTTTGAATACTTTGGACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCACAGGAGGCGTCTTTAATAACATCACAGAAATTTCACTCATTGGAAATAAGGATCTCTGTGGGGGGATACCTCAACTGAAGCTCCCTGCATGCTCTAGGTTACCCTCAAAGAATCACAAGTGGTCTCTTAGAAAGAAACTCATCCTCATCATTGTAATTGTAGTTGGAGGGGGATTGGTCagtttcataatatttatcaGCATCTATTTGTTCAAGAAAAAGCTCAAAACATTATCTTCATCACGGTCTCTGCAAAATATGTACTTGAAGGTTTCTTATGGAGAGCTGCATGAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGCGTTGGAAGCTTTGGTTCTGTATACAAAGGATCTCTTCTCCATTTCGAAAGACCTGTTGCTGTAAAGGTGTTGAATCTTGAAACTTGCGGGGCATCAAAGAGTTTCACAGATGAATGCAAGGCTCTAGGAAATATCAAGCACCCGAATGTTCTCAACATCCTGACTTGTTGTtcaattattgattataatgGGGATGATTTCAAGGCTATAGTTTTCGAGTTCATGCCTAATGGGAGTCTAGAAAGTTTGCTGCACTTCAACGAAGAGCTCGAGTCTAGAAATTTCAATCTCAACCTTCAACTTATGCTAAATGTTGCTCTTGATGTTGCTAATGCATTGGATTATCTTCATCATGGTTCCGAGCAAGCTATAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGACAATGACAATGTTGCCCACTTGGGAGATTTTGGGTTAGCAAGGCTCCTTAATGTTGTCACGGGACATTCCAGCAGAGATCAGGTTAGTTCGTCTGCAATTAAAGGAACCATTGGATATTTTCCCCCAGAGTACGGAGCAGGTGTCCGTGTATCACCAAAAGGAGATATCTACAGCTACGGAATTCTTCTATTGGAGATGCTCACAGGAATGAGGCCAACAGATAACATGTTTGGTGAGGGTCTAAGCCTACACAAATTCTGTCAGATGGCAATTCCAGAAGGAATCACTGAGATAGTAGATTCACGTTTGCTTGTGCCAATTAGTAAAGAAGGAACAAGGGTCATCAAAACCAACATCCGAGAGTGTCTGGTCTCCTTTGCTAGGATTGGAGTTGCATGTTCTGCAGAATTGCCCGTGCAACGAATGGGCATAAAAGATCCCAAAAGGGCCAAAACATTATCGTCTTCATGGTCTCTGCAAAATAGGTACGTGAAGGTTTCTTATGGAGAGCTGCATAAAGCAACCAATGGATTTTCTTCATCCAATTTAGTAGGCGCTGGAAGCTTTGGTTCTGTATACAAAGGATCTCTTCTCCATTTTGAAAAACCTGTTGCTGTAAAGGTGTTGAATCTTGAAACTTGTGGGGCATCAAAGAGTTTCACGGCTGAATGCAAGGCTCTAGGAAAGATCAAGCATCGGAATCTTCTCAACATCCTAACTTGTTGTTCAAGTATTGATTATAATGGGTATGATTTCAAGGCTATAGTTTTTGACTTCATGCCTAATGGGAGTCTAGAAAGTTTGCTGCACAGCAACGAAGAGCTCAAGTCAAGAAATTTCGACCTCAACCTTCAAGTTAGGCTAAATATTGCCCTTGATGTTGCTAATGCATTGGATTATCTTCATCATGGTTCCGAGCAAGCTGTAGTTCACTGTGATATTAAACCAAGCAACGTTCTTCTTGACGATGACATTGTTGCCTACTTGGGAGATTTTGGGTTAGCAAGGCTCCTTCATGCGGCGGGCACGGGAAATTCCAGCAGAGATCAGGTTAGTTCGTGTGCAATTAAAGGAACCATTGGATATGTTCCCCCAGTTGTTGTTGGAACAGAGTATGGAACAGGTGCCCAAGTATCACCAAAAGGAGATATCTATAGCTACGGAATTCTTCTGTTGGAGATGCTCACGGGAATGAAACCAACAGATAACATGTTTGGTGAGGGTCGAAGCCTACACAAATGTTGTCAGATGGCAATTTCAAAAGGAATCACTGAGATAGTAGATTCACGTTTGCTTGTGCCAATTACGAAAGAAGGAACAAGGGTCATGGAAAGCAACATCATGGAGTGTCTGGTGTCCTTTGCTAAGATTGGAATTGCATGTTCAGCAGAAAAGCCCATTCAGCGAATGGGCATAAAAGATGTGATAGTGGAGTTGCACGTAATCAAGCAAAATCTACCCCACTACGTACCATTTTTGTGA 4845 0.412 MLYMTPATIGLPLSSESDKLALLALKQKLTNGVPNAFPSWNESLHFCEWQGVTCGHRHMRVTVLHLENQNWGGTLGPHLGNLTFLRRLILSNFNLHGEIPTQVGRLKRLQVLDLSHNNLHGKIPIHLTNCSKLDVINLLYNKLSGKVPSWFGIGSMTRLKYGVGVQVSPKGDIYSYGILLLEMLTGMKPTDNMFDEDLSLHKCCQMAIAERITEIVDSRLLAPITEEGTRVMETNIRECLVSFARIGVACSAELSVQRMDTKDVIVEMALTLIMFLLSVVSQTMVYMTPCTVGLALSSENDKLALLALKQKLTDDMPNALPSWNESLHFCEWEGVTCGHRHMRVSALHLENQNWGGTLGPPLGNLTFLRRLSLSNINLHGEIPTQVGRLKRLQVLDLSHNNLNGEIPIQLANCSNLQVINLLYNKLTGKVPSWFGIGSMTQLTKLLLGANDLIGTIPPSLGNLSSLQNITLARNHLEGSIPHRLGRLSNLKELNLGLNSLSGVVPDSLYNLSNIQIFVLGKNQLCGTLPSNMHLAFPNLRVFFVGWNRFNGTFPSSISNITGLQAFDISSNGFNGPIPPTLGSLNKLKRFSIAYNSFGSGRAQDLDFLSSLTNCTQLHILLLDNNEFGGVLPDLIGNFSTNLTSLSMGNNQISGMIPEGIGQLIGLTNFVMVHNYLEGTIPDSIGKLKNLVRFALQGNKFSGNIPNAIGNLTMLSELYLHTNKFEGSIPLSLKYCTRMQSFGVADNNLSGDIPNQTFGNLEGLINLDLSNNSFTGSIPLEFGHLKHLSILYLNENKLSGEIPPELGACSALTELVLERNFFGGSIPSSLGSLISLEILDLSNNNFSSTIPGELQNLSFLNTLDLSFNHLYGEVPTGGVFNNITEISLIGNKDLCGGIPQLKLPACSRLPSKNHKWSLRKKLILIIVIVVGGGLVSFIIFISIYLFKKKLKTLSSSRSLQNMYLKVSYGELHEATNGFSSSNLVGVGSFGSVYKGSLLHFERPVAVKVLNLETCGASKSFTDECKALGNIKHPNVLNILTCCSIIDYNGDDFKAIVFEFMPNGSLESLLHFNEELESRNFNLNLQLMLNVALDVANALDYLHHGSEQAIVHCDIKPSNVLLDNDNVAHLGDFGLARLLNVVTGHSSRDQVSSSAIKGTIGYFPPEYGAGVRVSPKGDIYSYGILLLEMLTGMRPTDNMFGEGLSLHKFCQMAIPEGITEIVDSRLLVPISKEGTRVIKTNIRECLVSFARIGVACSAELPVQRMGIKDPKRAKTLSSSWSLQNRYVKVSYGELHKATNGFSSSNLVGAGSFGSVYKGSLLHFEKPVAVKVLNLETCGASKSFTAECKALGKIKHRNLLNILTCCSSIDYNGYDFKAIVFDFMPNGSLESLLHSNEELKSRNFDLNLQVRLNIALDVANALDYLHHGSEQAVVHCDIKPSNVLLDDDIVAYLGDFGLARLLHAAGTGNSSRDQVSSCAIKGTIGYVPPVVVGTEYGTGAQVSPKGDIYSYGILLLEMLTGMKPTDNMFGEGRSLHKCCQMAISKGITEIVDSRLLVPITKEGTRVMESNIMECLVSFAKIGIACSAEKPIQRMGIKDVIVELHVIKQNLPHYVPFL 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3025 1614 ProSitePatterns Protein kinases ATP-binding region signature. 983 1006 IPR017441 GO:0005524
Ssu6g3025 1614 SMART LRR_typ_2 832 855 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 784 808 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 856 881 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 487 510 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 106 130 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 389 413 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 760 783 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 439 463 IPR003591 -
Ssu6g3025 1614 SMART LRR_typ_2 640 663 IPR003591 -
Ssu6g3025 1614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1108 1120 IPR008271 GO:0004672|GO:0006468
Ssu6g3025 1614 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 160 - -
Ssu6g3025 1614 Gene3D Phosphorylase Kinase; domain 1 1282 1380 - -
Ssu6g3025 1614 Gene3D Transferase(Phosphotransferase) domain 1 159 270 - -
Ssu6g3025 1614 PANTHER LRR RECEPTOR-LIKE KINASE 1269 1608 - -
Ssu6g3025 1614 PANTHER LRR RECEPTOR-LIKE KINASE 161 269 - -
Ssu6g3025 1614 PANTHER LRR RECEPTOR-LIKE KINASE 289 1267 - -
Ssu6g3025 1614 Pfam Protein kinase domain 979 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3025 1614 Pfam Protein kinase domain 1301 1546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3025 1614 SUPERFAMILY L domain-like 639 895 - -
Ssu6g3025 1614 SUPERFAMILY Protein kinase-like (PK-like) 1273 1604 IPR011009 -
Ssu6g3025 1614 SUPERFAMILY L domain-like 15 160 - -
Ssu6g3025 1614 Pfam Leucine rich repeat N-terminal domain 16 54 IPR013210 -
Ssu6g3025 1614 Pfam Leucine rich repeat N-terminal domain 299 337 IPR013210 -
Ssu6g3025 1614 PRINTS Leucine-rich repeat signature 389 402 - -
Ssu6g3025 1614 PRINTS Leucine-rich repeat signature 109 122 - -
Ssu6g3025 1614 SUPERFAMILY L domain-like 298 597 - -
Ssu6g3025 1614 SUPERFAMILY Protein kinase-like (PK-like) 164 241 IPR011009 -
Ssu6g3025 1614 ProSiteProfiles Protein kinase domain profile. 977 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3025 1614 Pfam Leucine rich repeat 810 869 IPR001611 GO:0005515
Ssu6g3025 1614 Pfam Leucine rich repeat 742 797 IPR001611 GO:0005515
Ssu6g3025 1614 Pfam Leucine rich repeat 465 524 IPR001611 GO:0005515
Ssu6g3025 1614 PANTHER LRR RECEPTOR-LIKE KINASE 6 160 - -
Ssu6g3025 1614 Gene3D Transferase(Phosphotransferase) domain 1 1381 1609 - -
Ssu6g3025 1614 Gene3D Transferase(Phosphotransferase) domain 1 1059 1281 - -
Ssu6g3025 1614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1430 1442 IPR008271 GO:0004672|GO:0006468
Ssu6g3025 1614 Gene3D Ribonuclease Inhibitor 15 158 IPR032675 -
Ssu6g3025 1614 Gene3D Ribonuclease Inhibitor 298 436 IPR032675 -
Ssu6g3025 1614 SMART serkin_6 977 1279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3025 1614 SMART serkin_6 1299 1604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3025 1614 Gene3D Ribonuclease Inhibitor 437 604 IPR032675 -
Ssu6g3025 1614 ProSitePatterns Protein kinases ATP-binding region signature. 1305 1328 IPR017441 GO:0005524
Ssu6g3025 1614 Gene3D Phosphorylase Kinase; domain 1 941 1058 - -
Ssu6g3025 1614 Gene3D Ribonuclease Inhibitor 605 913 IPR032675 -
Ssu6g3025 1614 ProSiteProfiles Leucine-rich repeat profile. 834 857 IPR001611 GO:0005515
Ssu6g3025 1614 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1269 1608 - -
Ssu6g3025 1614 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 161 269 - -
Ssu6g3025 1614 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 289 1267 - -
Ssu6g3025 1614 SUPERFAMILY Protein kinase-like (PK-like) 952 1265 IPR011009 -
Ssu6g3025 1614 ProSiteProfiles Protein kinase domain profile. 1299 1576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3025 Ssu-Chr6 69280580 69335746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3025 60 481 Receptor kinase-like Gene Family AT3G47570 24.784 4.66e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu6g3025 Pkinase 3.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3025 - - gmx:100777490 1633.62