Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3021 ATGGCTTCCTCTTACCGTGACCGCACGTCGGAGTTCCGGTTACTGTCGGAGGCTCTGAAGAAGATTGGAGGAGGCGGGGCGCCTCCGGTTCAACCTGAAAACGCTCCTTCTACCTCTCACGAATCCTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGAATCGGGTTGGGGATCCACGAGACCTCGCTGAAGATCGCGAGGCTCGCACAGCTGGCGAAGAAATCGTCCATGTTCAACGATCCGGCTGTGGAGATTCAGGAGCTGACCGCGTTGATTAAGAACGAAATCACGGCGCTGAACTCGGCTCTCTCCGATTTGCAAACCATTCAGAACATGGATATGGCTGACGGCACTTACTCGCAGGATAGGATTGTGCATTCGACCGCGGTTTGTGATGACTTGAAGAGCAAACTCATGGGAGCCACGAAGCACCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCATGAGAACAGGAAGCAGATATTTTCCAAGAATGTATCAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCAGCTAATGAGCCGCCACCTTGGTCAAATTCGTTGAATGCATCTGAGAGTTTGCAACAAGCATCGGTATTACTGTCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGGGGACAACACTCCATCTCATCAAATGGAATTGTCTATGGTACAGCAGGTTGTTCCTCGGCATGAAAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCTCATCAAGGGGAGCTTGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAGGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATATCATCAAATAGGTGGCTTCTAATAAAGATATTCGCCATTCTGATACTTTTCCTCATGATCTTCATATTCTTTGTCGCCTAA 1011 0.4777 MASSYRDRTSEFRLLSEALKKIGGGGAPPVQPENAPSTSHESYSRSEFNRKASRIGLGIHETSLKIARLAQLAKKSSMFNDPAVEIQELTALIKNEITALNSALSDLQTIQNMDMADGTYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHENRKQIFSKNVSRENPFQHQPKPANEPPPWSNSLNASESLQQASVLLSNGAPVGNQLRRRLAGDNTPSHQMELSMVQQVVPRHENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLMIFIFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3021 336 Pfam SNARE domain 281 332 IPR000727 -
Ssu6g3021 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Ssu6g3021 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Ssu6g3021 336 CDD SNARE_syntaxin5 247 332 - -
Ssu6g3021 336 MobiDBLite consensus disorder prediction 160 195 - -
Ssu6g3021 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu6g3021 336 Gene3D - 41 299 - -
Ssu6g3021 336 SMART tSNARE_6 239 306 IPR000727 -
Ssu6g3021 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Ssu6g3021 336 MobiDBLite consensus disorder prediction 22 47 - -
Ssu6g3021 336 PANTHER SYNTAXIN-31 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3021 Ssu-Chr6 69198402 69203781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3021 1 336 SNARE and Associated Proteins AT5G05760 65.680 3.08e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3021 K08490 - gmx:100777383 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3021 6 69198402 69203781 Ssu6g3021 6 69198402 69203781 ECH