Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3020 ATGGCGGGGAAACTGTCAAAAGCAGCTTACGATGCAAAGATGTTGAAGCTTCTGAAAGAGTACAGTCAGGTGTTGGTGGTTTCATCAGACAATGTGGGTTCCAACCAGCTTCAGGGCATACGGAGGGGACTCCATGCTGATTCGGTGGTGGTGATGGGAAAGAACTCAATGATGAAACGCTCTATCATCTTGGATGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACTTGAGGGAGGTTAGCGAACAGGTTGCCAAGTTCAAGACTGTTCAACCTATTCTCATGTGCCCCAAGTACACGTCATATGACACATACCACAATTGTTCCTATATGCAATCTGGACAGTTACCTTTGGGCCTCACGTGTTGTAATCAGCAGTCTTCGCAGGCTTCTGAGCCTTTTCTCGTATGCTCAAAATTCTTGCCACACCAACATTGTTTCTTGATGAGATCAAGACAGTTCTTGATGACGAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGGAATGATGGAGAGTGA 570 0.4614 MAGKLSKAAYDAKMLKLLKEYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSMMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKFKTVQPILMCPKYTSYDTYHNCSYMQSGQLPLGLTCCNQQSSQASEPFLVCSKFLPHQHCFLMRSRQFLMTSIWSPLLLLAGNDGE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3020 189 Pfam Ribosomal protein L10 6 104 IPR001790 -
Ssu6g3020 189 Gene3D - 4 124 IPR043141 -
Ssu6g3020 189 SUPERFAMILY Ribosomal protein L10-like 7 107 IPR043141 -
Ssu6g3020 189 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 186 - -
Ssu6g3020 189 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3020 Ssu-Chr6 69194860 69196637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3020 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 49.412 2.07e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3020 K02941 - mnt:21409050 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3020 6 69194860 69196637 Ssu6g3020 6 69194860 69196637 ECH