Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3019 atggcGGTGAAACCTACCAAGGCAGAGAAGAAGGTCGCTTACGATGCGAAGCTGTGCCAGCTTCTGGAAGAGTACGGCCAGATCCTTATCGTCAACGCCGACAACGTCGGATCCAACCAGCTCCAGAACATTCGCAGGGGTCTCCGTGGCGACTCTGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGTTCTGTTAGAATTCACGCTGAGAAAACCGGCAACAACGCCTTTCTCAGCCTTATCCCCCTTCTTGTCGGCAATGTGGGATTGATTTTCACCAAGGGTGACTTGAAAGAGGTCAGCGAGGAGGTTGCCAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTTCCTCCAGGCAACACTGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAAGAAGGGAGACAAGGTTGGATCTTCTGAAGCTGCATTGCTTGCCAAGCTTGGCATAAGGCCGTTCTCATACGGGCTTGTGGTCCTTTCTGTTTACGATAATGGTTCTGTGTTCAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCTCATTGAGAAGTTTGCCGTCGGTGTCTCCATGGTTACTTCACTTTCATTGGCTGTCTCATACCCAACACTTGCCGCTGCACCACATATGTTTGTCAATGCCTACAAGAACGTTCTTGCTGTTGCAGTTGAGACAGATTATTCTTTCCCAGAGGCAGACAAGGTTAAGGAGTACCTGAAGGATCCAAGTAAATTTGCTGTAGCTGTTGTTGCTACTCCTGCTGCTGATTCTGGTGCTGGCCCAGCTGCTGCTGCCaaggaagaggaaaagaaagaagaaccaGCTGAAGAATCTGATGATGACATGGGTTTCAGTCTGTTTGACTAA 966 0.4783 MAVKPTKAEKKVAYDAKLCQLLEEYGQILIVNADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLSLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAVGVSMVTSLSLAVSYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAVVATPAADSGAGPAAAAKEEEKKEEPAEESDDDMGFSLFD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3019 321 Gene3D - 6 209 IPR043141 -
Ssu6g3019 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Ssu6g3019 321 Pfam 60s Acidic ribosomal protein 234 320 - -
Ssu6g3019 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 321 - -
Ssu6g3019 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Ssu6g3019 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 321 - -
Ssu6g3019 321 CDD Ribosomal_P0_L10e 9 185 - -
Ssu6g3019 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Ssu6g3019 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Ssu6g3019 321 Gene3D - 114 185 IPR043164 -
Ssu6g3019 321 MobiDBLite consensus disorder prediction 306 321 - -
Ssu6g3019 321 MobiDBLite consensus disorder prediction 287 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3019 Ssu-Chr6 69187074 69189059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3019 1 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 83.125 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3019 K02941 - gmx:100777482 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3019 6 69187074 69189059 Ssu6g3019 6 69187074 69189059 ECH