Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3012 ATGCCCAAAATCCAAACATATTTTGCACCCACGACGGGTGTGGCTCTCTTACACACGTCGTGCTTGGTGAATGGAAGCATGGCATCGAGGGAGTGCACAGTGTTTCAGTTCTCTTCTTCGCAGAGCTTGTCGGCGAAGGTTCATCCTCTGGTTGTCTTCAACATCTGCGATTGCTACGTTCGACGTCCCGACCAAGCCGAGCGCGTCATCGAAACACTACTTGGCTCCATTCTCCCCAACGGAACCGTCGATGTCCGTAATTCCTATGCCATTCACCACAGCGAGTCCGTTGACCAGGTCGTCCACACTCTTTCACCTACATTCAAGTTTTCACTCCTTACCCttattttcatTGGCGATAATGCATTAATCCATGAATTTTATTCTCGAGAAgtacccaattttatccattTGACTGTTGATACGGGACTCACAAAGGGAGCCGGTACCATTAGAGCTattgtttcaaacaatttatctcTTGGAGACCGGCAAATTGCTGCACAGTTTCAAGAAATTCCTTTAGATCTTCGTGTGGTTGAAGCTGAGCGCATTGGATTTGATACTCTGAAGGCAACGGCTGTTGACAAAATTCCCTCTGATTTAGAAGGGATGGAAGCATCAATGGGACATCTATTAGGCTTGATAGATGACATCTACAAATATGTAGATGATGTTGTGGAAGGGCGTATTGATCCAGACAACAAAATTAGAAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGCCCTCATCAGCTTTTGAGAAGTTGTGA 780 0.4333 MPKIQTYFAPTTGVALLHTSCLVNGSMASRECTVFQFSSSQSLSAKVHPLVVFNICDCYVRRPDQAERVIETLLGSILPNGTVDVRNSYAIHHSESVDQVVHTLSPTFKFSLLTLIFIGDNALIHEFYSREVPNFIHLTVDTGLTKGAGTIRAIVSNNLSLGDRQIAAQFQEIPLDLRVVEAERIGFDTLKATAVDKIPSDLEGMEASMGHLLGLIDDIYKYVDDVVEGRIDPDNKIRRFISDAVGSLPKLPSSAFEKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3012 259 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 24 102 - -
Ssu6g3012 259 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 43 101 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu6g3012 259 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 118 259 - -
Ssu6g3012 259 Gene3D Cytidine Deaminase, domain 2 117 196 - -
Ssu6g3012 259 Gene3D Cytidine Deaminase, domain 2 32 109 - -
Ssu6g3012 259 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 24 102 - -
Ssu6g3012 259 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 118 259 - -
Ssu6g3012 259 Pfam Maintenance of mitochondrial structure and function 181 258 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3012 Ssu-Chr6 69077528 69081136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3012 28 259 Eukaryotic Initiation Factors Gene Family AT2G39990 59.375 3.84e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3012 K03249 - gmx:100775223 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3012 6 69077528 69081136 Ssu6g3012 6 69077528 69081136 ECH