Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3011 ATGGTTCAGATAAACTCAGAACTAATAAAGTGTTTAGTTCAGAGGCATATAGAATCATTGAGAGGAATATCTGGAAGCAAAATATGGACGAGGGCATGTCAGGCTTTTGCATTAGATCAGGAAGCGTCCATGGTAAAAGTAGGCAGCACTACTACCACTGGCACTAAGTGTGGGCGTTGGAATCCCACCACAGAACAGGTTAAACTTCTAACTGAACTATTCAGGTCAGGGCTCCGCACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTAAGCTTTTATGGTAAGATAGAGAGCAAGAATGTGTTCTATTGGTTTCAGAACCATAAGGCCAGGGACAGACAGAAGCGCCGTAAGGTCTCCTTTGATGACGAGGATGTGATTCGTAGAGAAAACTCTATGAACGCTTCTACACAAAGTCTTGCTGAGATGTATCAAGTTTCAGAGCCAGATAGGCTGACTGAGACTCTTCAACTCTTCCCCTTAAACTCCTTTGGTGAATCTGAACCAGAGAAGCTGAGGTTGCATGCAAATGAATGTAgggataataataatacaatgtTTTCGTACACAATGGGAGAACAAATGGAGCACCCACCATTAGACCTGCGCTTGAGCTTTATCTAA 633 0.425 MVQINSELIKCLVQRHIESLRGISGSKIWTRACQAFALDQEASMVKVGSTTTTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARDRQKRRKVSFDDEDVIRRENSMNASTQSLAEMYQVSEPDRLTETLQLFPLNSFGESEPEKLRLHANECRDNNNTMFSYTMGEQMEHPPLDLRLSFI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3011 210 Pfam Homeodomain 57 117 IPR001356 GO:0003677
Ssu6g3011 210 ProSiteProfiles 'Homeobox' domain profile. 53 118 IPR001356 GO:0003677
Ssu6g3011 210 PANTHER WUSCHEL-RELATED HOMEOBOX 7 47 199 - -
Ssu6g3011 210 CDD homeodomain 59 119 IPR001356 GO:0003677
Ssu6g3011 210 Gene3D - 56 124 - -
Ssu6g3011 210 SUPERFAMILY Homeodomain-like 58 120 IPR009057 -
Ssu6g3011 210 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 47 199 IPR044555 GO:0003700|GO:0099402
Ssu6g3011 210 SMART HOX_1 55 122 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3011 Ssu-Chr6 69058640 69059603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3011 53 210 Wox Gene Family AT3G11260 57.647 8.72e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu6g3011 Homeodomain 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3011 - - gmx:100820304 283.878