Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3008 ATGGACAAAAATCTCTTTTATCCAATTGTAATTGCATACCCCACAACTACCAAAATGACTTCTCCAGCACCCACCTTGCTCTCAAAATGCACCGTCTTCCCAGACCAAAAGTCCACTCTCGGAAACCTCAAACTCTCCGTTTCGGACCTCCCCATGTTGTCCTGCCACTACATCCAAAAGGGATGCCTCTTCACCCAACCCAATCTTCCACTCCACTCTTTAATCCCTCTCCTTAAATCCGCACTCTCTCGaacactctctctctttcccccTCTCGCCGGCCGTCTAACCACCGACTCCAACGGTTACGTCCATGTCGCCTGCAACGACGCCGGCGTCGATTTCATCCACGCCAATGCCACCGGCCATCGCATCTGTGACCTACTCTCCCCTCTCGACGTCCCCGAATCCTTCAAGGAATTCTTCGCCTTCGATAGGAAAGTCAGCTACACCGGCCATTCCTCGCCGATTCTCGCCGTTCAGGTCACGGAACTCGCCGACGGCCTCTTCATCGGCTGCGCCGTCAACCACGCCGTCACCGACGGCACCTCGTTTTGGAATTTCTTCAACACCTTCGCTCAGGTCTGCAGAGGAGCGAACAACTGCATCCGCAACGTGCCGGACTTCCGCCGCGAGTCGGTTCTCATCTCCGACGCCGTTCTCCTGCTACCGGAGGGCGGTCCTCAGGTCACGTTCGATTCTCTCGCGCCGCTGCGGGAGAGAATCTTCAGCTTCAGCCGCGAAGCCATTCAGAAGCTGAAAGCCAAAGCGAACAACCGCCAGTGGCCGGAGAATAACAACGCCGGTTACGCCGCGGAGTTGATGCGGAAGTGGAGCAACGATCATCACGCGAAGGAGAACGGGAAAGCCAGCACAATTCTCGAGAACTGGTTCAAGGTTAATTCAAATTCGAATGTGCGAACGGCAACCGAAACGACGGAGATTTCGTCGTTTCAGTCGGTGTGCGCGTTGCTGTGGCGCGCGGTGACGCGGGCGAGGAAATTGCCTGCGTCGAAAACGACGACGTTTAGAATGGCGGTGAGCTGTCGTCACAGGATAGAGCCGAAATTGGAAACGTACTACTTCGGGAACGCGATTCAGAGCGTGCCTACTTATGCTTCTGCCGGCGACGTGGTGTCTAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACAAAAACGTGAAGGCGCACGACGACGCTATGGTGCGGCGCTTCGTAAGCGATTGGGAGCGGAACCCGAGGTGCTTCCCCCTGGGGAACCCTGACGGTGCGTCAATAACCATGGGTAGTTCCCCGAGGTTTCCAATGTATGATAACAATTTCGGGTGGGGGAGGCCTCTCGCGGTGCGAAGTGGAAGAGCGAACAAATTTGACGGTAAGATCTCAGCATTTCCCGGTAGAGATGGAACAGGAACCGTTGATTTGGAGGTTGTTTTGTCGCCCGAAACCATGACGGGGCTCGAGTCTGATCCCGAGTTCATGCGATATGCAACGTGTCAGTTATGA 1506 0.5471 MDKNLFYPIVIAYPTTTKMTSPAPTLLSKCTVFPDQKSTLGNLKLSVSDLPMLSCHYIQKGCLFTQPNLPLHSLIPLLKSALSRTLSLFPPLAGRLTTDSNGYVHVACNDAGVDFIHANATGHRICDLLSPLDVPESFKEFFAFDRKVSYTGHSSPILAVQVTELADGLFIGCAVNHAVTDGTSFWNFFNTFAQVCRGANNCIRNVPDFRRESVLISDAVLLLPEGGPQVTFDSLAPLRERIFSFSREAIQKLKAKANNRQWPENNNAGYAAELMRKWSNDHHAKENGKASTILENWFKVNSNSNVRTATETTEISSFQSVCALLWRAVTRARKLPASKTTTFRMAVSCRHRIEPKLETYYFGNAIQSVPTYASAGDVVSRDLRWCAEQLNKNVKAHDDAMVRRFVSDWERNPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLSPETMTGLESDPEFMRYATCQL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3008 501 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 24 497 - -
Ssu6g3008 501 Gene3D - 25 220 IPR023213 -
Ssu6g3008 501 PANTHER OS01G0854000 PROTEIN 24 497 - -
Ssu6g3008 501 Pfam Transferase family 26 494 - -
Ssu6g3008 501 Gene3D - 238 491 IPR023213 -
Ssu6g3008 501 SUPERFAMILY CoA-dependent acyltransferases 53 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3008 Ssu-Chr6 69030213 69031718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3008 77 488 Monolignol Biosynthesis Gene Families AT5G48930 27.251 1.55e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3008 - - vun:114195488 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3008 6 69030213 69031718 Ssu4g2325 4 55858456 55859871 ECH
Ssu6g3008 6 69030213 69031718 Ssu6g3008 6 69030213 69031718 ECH
Ssu6g3008 6 69030213 69031718 Ssu9g1569 9 51913962 51915436 PCT