Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3002 ATGGAATTGGAAACCCTCTACCCCACTTGTTTCATGCCAAATTCAAATTGGTTTGTGCAAGAGAGCCACAGCACAGAATGGACTAGAGAAGATAACAAGAAGTTTGAAAGTGCCCTTGCCATATATGACAAGGACACCCCAGACAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGCTATCTTGCCTCTTCTTTCACCTTTGAGCTGGTTGACAAACACAACTATGATGGATGCAGAAGAAGGCCTGCTCCTGTCAGAGGTTCTGatcaagagagaaagaaaggggtTCCATGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTGCTGCATCAGATAAGAACAAGCCCCAGTTATTTAATGGGTCTCCCCTGATTGCATCACAGCAGAAGCTGAATAGCATGTCAAAAGTACAGCTGGACTGGTCTAGCCACTACAATGATGGATCACTCATGGTTTTCAACCAAAATAGTGATGACTTGTTTATGTCATCTTCATCTGATATCACTTCCAAGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTATACGAGGCTTATGCCAAGTTAAAAGTTCCAGGTTTCAGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCACTGTAA 918 0.4248 MELETLYPTCFMPNSNWFVQESHSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDKHNYDGCRRRPAPVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKNKPQLFNGSPLIASQQKLNSMSKVQLDWSSHYNDGSLMVFNQNSDDLFMSSSSDITSKALKMQGQDLYDCALYEAYAKLKVPGFSMAPRDFNNEAVFGIHAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3002 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 286 IPR043363 -
Ssu6g3002 305 SMART sant 123 173 IPR001005 -
Ssu6g3002 305 SMART sant 23 75 IPR001005 -
Ssu6g3002 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Ssu6g3002 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Ssu6g3002 305 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Ssu6g3002 305 CDD SANT 126 170 IPR001005 -
Ssu6g3002 305 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Ssu6g3002 305 Gene3D - 19 86 - -
Ssu6g3002 305 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 286 - -
Ssu6g3002 305 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Ssu6g3002 305 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Ssu6g3002 305 Gene3D - 125 176 - -
Ssu6g3002 305 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Ssu6g3002 305 CDD SANT 26 72 IPR001005 -
Ssu6g3002 305 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3002 Ssu-Chr6 68825856 68827288 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g3002 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3002 - - gmx:778039 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3002 6 68825856 68827288 Ssu4g2324 4 55633064 55634602 ECH
Ssu3g1163 3 27659451 27660840 Ssu6g3002 6 68825856 68827288 ECH
Ssu4g2324 4 55633064 55634602 Ssu6g3002 6 68825856 68827288 ECH
Ssu6g2614 6 61232046 61233361 Ssu6g3002 6 68825856 68827288 ECH
Ssu9g1184 9 44216496 44217845 Ssu6g3002 6 68825856 68827288 ECH
Ssu6g3002 6 68825856 68827288 Ssu6g3002 6 68825856 68827288 ECH
Ssu9g1565 9 51787217 51788704 Ssu6g3002 6 68825856 68827288 PCT