Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2995 ATGTCCTTGCCTGACTCACCCTCGACCTGTCTGTCTCTCTTCACAACCTCACCGATCTGCCATTTCTCACTTTTCTATCAACAAGCACCTGAGGTTATTGTAAAGGCAAATCTAAGAAGCTACATTGTGTTTAGGCATTTGGAATTGGTGGTGGAAGGTTTGGTGCACTTAGATCCAAAAGCCACTGACATGTCTTTTATTGGCACCCAACAGAAGTGCAAGGCTTGTGACAAAACGGTATACCCCGTTGATCAGCTATCTGCTGATGGCTCTGCTTACCACAAAGCTTGCTTCAAGTGCACTCATTGCAAAGGAACCTTAAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGTTCTTTCAAGAAGAACTTCCAGTCACCTGCTAAGCAAGCTGACAAAACAACTCCTGAGCTgATAAGGTCCCCTAGTAAAGCTGCTAGCATGTTCTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCACATGGTGGCTGTCCCATAACGCCATCCAATTATGCAGCCCTTGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAGTCTGCATCAATCAAACGGGCAACAAACTCTATTCCACAATCTTGA 759 0.444 MSLPDSPSTCLSLFTTSPICHFSLFYQQAPEVIVKANLRSYIVFRHLELVVEGLVHLDPKATDMSFIGTQQKCKACDKTVYPVDQLSADGSAYHKACFKCTHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFQSPAKQADKTTPELIRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLIKSASIKRATNSIPQS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2995 252 ProSitePatterns LIM zinc-binding domain signature. 73 107 IPR001781 -
Ssu6g2995 252 Pfam LIM domain 171 226 IPR001781 -
Ssu6g2995 252 Pfam LIM domain 73 128 IPR001781 -
Ssu6g2995 252 SMART lim_4 170 222 IPR001781 -
Ssu6g2995 252 SMART lim_4 72 124 IPR001781 -
Ssu6g2995 252 ProSiteProfiles LIM domain profile. 169 229 IPR001781 -
Ssu6g2995 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 196 - -
Ssu6g2995 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 98 - -
Ssu6g2995 252 CDD LIM2_SF3 171 231 - -
Ssu6g2995 252 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 64 252 - -
Ssu6g2995 252 PANTHER OS06G0237300 PROTEIN 64 252 IPR045268 GO:0051015
Ssu6g2995 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 139 - -
Ssu6g2995 252 CDD LIM1_SF3 69 131 - -
Ssu6g2995 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 236 - -
Ssu6g2995 252 Gene3D Cysteine Rich Protein 67 137 - -
Ssu6g2995 252 Gene3D Cysteine Rich Protein 165 235 - -
Ssu6g2995 252 ProSiteProfiles LIM domain profile. 71 131 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2995 Ssu-Chr6 68776507 68778897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ssu6g2995 LIM 3.8e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2995 K09377 - gmx:100807765 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2995 6 68776507 68778897 Ssu6g2995 6 68776507 68778897 ECH