Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2992 ATGGTAAAAGGACGGCAAGGAGAGCGTGTCAGGCTTTACGTCAGAGGTTCGATTCTTGGATACAAGAGGTCCAAGTCAAATCAATACCCAAACACCTCTCTTATCCAGATTGAGGGAGTAAACTCCAAGGAAGAGGTTACATATTACTGTGGGAAGCGCATGGCTTACATTTACAAAGCCAAGGTAAAAAAGAATGGGAGCCACTATCGCTGCATTTGGGGTAAGGTCACTAGGCCTCATGGTAACAGCGGTATAGTTCGTGCTAAGTTCAAGTCAAATCTGCCACCAAgatcaatgGGAGCAAGGGTTAGAGTCTTTATGTATCCAAGCAATGTATGA 339 0.4366 MVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIEGVNSKEEVTYYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2992 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 1 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
Ssu6g2992 112 PANTHER 60S RIBOSOMAL PROTEIN L35A-1 1 112 - -
Ssu6g2992 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Ssu6g2992 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Ssu6g2992 112 Gene3D translation elongation factor selb, chain A, domain 4 6 112 IPR038661 -
Ssu6g2992 112 SUPERFAMILY Translation proteins 12 106 IPR009000 -
Ssu6g2992 112 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2992 Ssu-Chr6 68739314 68740245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2992 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 88.393 9.09e-73 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2992 K02917 - nnu:104593384 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2992 6 68739314 68740245 Ssu6g2992 6 68739314 68740245 ECH