Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2988 ATGACCGAAGAAGACCGCTCCGCCGAGCCAACCGTCCGCAATGGCGTCGACGGCGGCGAGGAGTTGGAGCTTGCGGGCGGCGATGCTGAGGTGACGGTCGTCGGTGACGGTTCGGTGGCCGGAAGAGTGAAGGGACCATGGTCGCCGGAGGAGGATGCGGTGCTGAGCCGATTGGTGGCGCAGTTCGGGGCGAGGAACTGGAGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTCAAACGCAAGCCCTTCACTGATGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGTAGAACAGATAATGCGATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCACATCCTGATATGCTCGAAGATGGTAGCTTTGAAAAAGCAAAAGCATCTTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTACAGAAGTCAGAAATGTCATCATGGATAACGAAAATAATGCTCCAAGAAAAGATGATGCTAAAGTGGAGGAACATCCTACCCTTCATCGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTTCGGGCAGGCCAACCACTGGATCATGTTCAAAGATGTTCCCAAAGCAGAGCCCTTTGATCCAATCCCTTGAACCAAACGTAGGATCCTGCAAGTTATTTGATGGTATTGATTGTGAGCCCGTGGTTCCATTGCAATGTGGTCATGGCTGCTGCGCCAGAGACTCGAGGGAAAGCCATTCGCATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTATTTGGAGTCACCTTCTTTCTCTAGTCATGCATTGATTTCAATAGCTACAGACTTAAACAATATAGCTTGGATCAAGAGTGGCCTTGAGAATTATGGTGCTGGAGTAACTGAGAATACCGCAAACTTGACAGCATCTCAAGGGGTAGCTACTGCTTCGCAAACAAACTTCTTACGACAAGATCTAAAGAATGGCTATGGGCAATTTGAGGACGGACCTGGCAAGTTTTTGGGTACGATGCAAGAAGTGTTATCAACCAAGATGGCTAGGCAACATTTTGCAATGCCTGCGGAAGTTTGA 1197 0.4929 MTEEDRSAEPTVRNGVDGGEELELAGGDAEVTVVGDGSVAGRVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTDEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPAHPDMLEDGSFEKAKASSEETMSIGDINSLNPTEVRNVIMDNENNAPRKDDAKVEEHPTLHRPVARISAFSVYNPSGRPTTGSCSKMFPKQSPLIQSLEPNVGSCKLFDGIDCEPVVPLQCGHGCCARDSRESHSHGSLLGPEFVDYLESPSFSSHALISIATDLNNIAWIKSGLENYGAGVTENTANLTASQGVATASQTNFLRQDLKNGYGQFEDGPGKFLGTMQEVLSTKMARQHFAMPAEV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2988 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 90 IPR017930 -
Ssu6g2988 398 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Ssu6g2988 398 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Ssu6g2988 398 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Ssu6g2988 398 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2988 398 Gene3D - 98 144 - -
Ssu6g2988 398 CDD SANT 46 88 IPR001005 -
Ssu6g2988 398 Gene3D - 43 95 - -
Ssu6g2988 398 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 17 331 - -
Ssu6g2988 398 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Ssu6g2988 398 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Ssu6g2988 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Ssu6g2988 398 SMART sant 95 143 IPR001005 -
Ssu6g2988 398 SMART sant 43 92 IPR001005 -
Ssu6g2988 398 PANTHER MYB PROTEIN-RELATED 17 331 - -
Ssu6g2988 398 CDD SANT 98 141 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2988 Ssu-Chr6 68662298 68666586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2988 19 330 MYB Transcription Factor Family AT3G55730 48.802 5.19e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2988 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2988 K09422 - gmx:100781228 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2988 6 68662298 68666586 Ssu4g2258 4 53534571 53541813 ECH
Ssu6g2988 6 68662298 68666586 Ssu6g2988 6 68662298 68666586 ECH