Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2987 ATGTTGGTCACTGAGGATAAGTCTCATGTCGTTGTTGACATAGACAATAATGGCTGTTGTCACCGGAGCTCGGCCGGCGGCGAGGGGTGTTCCGCCGCCGGCGAGCGGTCAGATGAGGAGCAAAGGTCCTCCCATGATTCTGGCACTGAGATAGTTGGGGTGTGTGAGAAGGAGAGAGGATCCTCTGCATCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCAGTCCCTGAGGTTAAGGTGCATTTGGCCAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACTCCCATTGAGCTGGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACTTGTGAAATCTGTGGATCGGTTGCGCTCAATGTAGCTGGAGCTATTGAAATTCAAACGACAGAACAGTGGAATGAGGCAAATGATGCTTCCATGGTACTGCCATCTGGACCTGCGCCACCCGCAGAAACTCGAAATTTTTGGCAGGGTCACCGTTTTTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCCTTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 645 0.5039 MLVTEDKSHVVVDIDNNGCCHRSSAGGEGCSAAGERSDEEQRSSHDSGTEIVGVCEKERGSSASECSVEVDLEEGAVPEVKVHLANVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSVALNVAGAIEIQTTEQWNEANDASMVLPSGPAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2987 214 MobiDBLite consensus disorder prediction 24 50 - -
Ssu6g2987 214 PANTHER ZINC FINGER, RING-CH-TYPE 9 214 - -
Ssu6g2987 214 SUPERFAMILY RING/U-box 88 145 - -
Ssu6g2987 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 150 IPR013083 -
Ssu6g2987 214 Pfam RING-variant domain 91 142 IPR011016 GO:0008270
Ssu6g2987 214 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 214 - -
Ssu6g2987 214 CDD RING_CH-C4HC3_MARCH 91 143 - -
Ssu6g2987 214 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270
Ssu6g2987 214 SMART ringv_2 90 143 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2987 Ssu-Chr6 68649052 68653981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2987 29 214 C3H Transcription Factor Family AT5G05830 62.567 6.66e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2987 - - gmx:100818979 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2987 6 68649052 68653981 Ssu4g2257 4 53500537 53503817 ECH
Ssu3g1209 3 29457829 29460407 Ssu6g2987 6 68649052 68653981 ECH
Ssu4g2257 4 53500537 53503817 Ssu6g2987 6 68649052 68653981 ECH
Ssu6g2987 6 68649052 68653981 Ssu6g2987 6 68649052 68653981 ECH