Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2980 ATGAAAAGAGGCATATTAACGTCAAATTCTGCCAGTAATTTCGGTCCTAAGTTTTCCACTATGACAGCTTACACACCGTGGATACTCTCTGTGGCTGCTAGCACCATTGGCAGAAGGTTCATTACCAAGGTGCAGTTGGGCAACGGCATGGTTTTTGAGGGGGTTTCAATTAACACCTTTGATctcaaaaacaaaatgtttcCACTGATTTACGCTAGAGATATACCCAACACTCTTGATGGATATAACAGTTCCATATCCAGGCTTTGCTTGGATAATTCTGTGGATAAACATTTGGTGAAAGGAAAGATCGTTGTGTGTGACACCGCCGGGTCCTCTGAACAAGTTGGGGTTTTGTCTGGGGCAGCTGGGATGCTTGTTGGAGACACTAGTCCAAAAGATGCGCCATTCGTATTTGCACTGCCCGCAGCTTTCGTTAGCCTAAGGAACATTAAGCTCATACATTCTTACATGAATTCATCGAGAAATTCAATGGCCACAACATTTAGGAGTGATGAAGACAATGATTCGCCAGCCCCTTACGTAGTATCGTTTTCATCGAGAGGCCCAAATCCAATTACACCAAACATTCTCAAGCCTGACCTAGCTGCCCCAGGAGTTAACATTCTAGCTGCATCGTCTCCAGTGTCGtcaatttcagattttaaaggtGACAAAAGAACATTAAAATACAACATAATGTCCGGCACTTCAATGGCTTGTCCTCATGCATCCGCAGCCGCTGCATATGTGAAATCATTTCATCCAAATTGGTCTCCTGCTATGACCAAGTCCGCATTAATGACCACCGCTACTCCAATGAGTCCTACACTTAATCCTGAAGCTGAATTCGCATATGGTGCGGGGCAAATTAATCCTCTTAAAGCAGCAAATCCTGGTTTAGTGTACGATATTAGTGAAGCAGATTATGTCAAGTTCTTATGTGGAGAGGGTTATACAGATCAAATGCTTCGGATTCTCACTGAAGATCATAGTAGATGCAGCAAACACGCTAAAAGGGAAGCTGTATATGACCTCAATCTCCCATCAATTGCTCTTTATGTAAACGTCTCATCTTTCAGTCGTATTTTCCATAGAACGGTTACGAATGTGGGATCGGCAACGTCTAGTTATAAAGCCAAAGTGGTATCTCCATCTTTGTTGGATATTCAAGTGAAACCAAATGTTTTGTCCTTCACATCAATTGGGCAGAAGAAGTCATTCTCAGTCATCATTGAAGGGAGTATTAATGCCAATGTACTCTCTGCGTCTCTGGTTTGGGATGATGGCACCTTTCAAGTTAGAAGCCCCATTGTAGTGTATggtgaaatataa 1335 0.415 MKRGILTSNSASNFGPKFSTMTAYTPWILSVAASTIGRRFITKVQLGNGMVFEGVSINTFDLKNKMFPLIYARDIPNTLDGYNSSISRLCLDNSVDKHLVKGKIVVCDTAGSSEQVGVLSGAAGMLVGDTSPKDAPFVFALPAAFVSLRNIKLIHSYMNSSRNSMATTFRSDEDNDSPAPYVVSFSSRGPNPITPNILKPDLAAPGVNILAASSPVSSISDFKGDKRTLKYNIMSGTSMACPHASAAAAYVKSFHPNWSPAMTKSALMTTATPMSPTLNPEAEFAYGAGQINPLKAANPGLVYDISEADYVKFLCGEGYTDQMLRILTEDHSRCSKHAKREAVYDLNLPSIALYVNVSSFSRIFHRTVTNVGSATSSYKAKVVSPSLLDIQVKPNVLSFTSIGQKKSFSVIIEGSINANVLSASLVWDDGTFQVRSPIVVYGEI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2980 444 Gene3D - 314 442 - -
Ssu6g2980 444 Gene3D - 37 175 - -
Ssu6g2980 444 Pfam Subtilase family 26 289 IPR000209 GO:0006508|GO:0008236
Ssu6g2980 444 Pfam Fibronectin type-III domain 345 440 IPR041469 -
Ssu6g2980 444 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 441 IPR045051 -
Ssu6g2980 444 SUPERFAMILY Subtilisin-like 2 301 IPR036852 GO:0004252|GO:0006508
Ssu6g2980 444 PANTHER PUTATIVE-RELATED 1 441 - -
Ssu6g2980 444 CDD PA_subtilisin_like 44 167 - -
Ssu6g2980 444 ProSiteProfiles Serine proteases, subtilase domain profile. 1 297 - -
Ssu6g2980 444 Gene3D Peptidase S8/S53 domain 1 310 IPR036852 GO:0004252|GO:0006508
Ssu6g2980 444 ProSitePatterns Serine proteases, subtilase family, serine active site. 236 246 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2980 Ssu-Chr6 68462157 68465592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2980 1 441 Subtilisin-like Serine Gene Family AT5G59100 46.652 8.82e-128 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2980 - - gmx:100787973 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2980 6 68462157 68465592 Ssu6g2980 6 68462157 68465592 ECH