Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2977 atGGAATTCAACCTTTTCTCATTTATTGTTCTACCAATTACTAGAAATGCAACAGCCACAATATTTAAGAGTGAAGAAATAAATGATGGGCTAATTCCTTTCATAGCTTCGTTCTCATCAAGAGGTCCAAATCCAATCACACCAAATACTCTAAAGCCTGACATCGCTGCTCCGGGAGTTGAAGTTATAGCTGCATGGTCTCCAATTGACCCAATTTCAAGTGTTAAAGGTGACAAAAGAACAGTACAATATAATGTAATCTCTGGCACTTCAATGGCCTGCCCTCATGCTACTGCAACAGCTGCATATATCAAATCATTTCATCCTAATTGGTCTCCTGCTATGATCAAGTCTGCATTGATGACAACTGTGTGTAAAGGTGATTGGGTTGAAAAAAGCTCACAACCCAATGTACACATACAAAATCAATACAATATACAATTAGAGTCGTCCTTATCATTTGAGGATATTCCAAAATGA 480 0.375 MEFNLFSFIVLPITRNATATIFKSEEINDGLIPFIASFSSRGPNPITPNTLKPDIAAPGVEVIAAWSPIDPISSVKGDKRTVQYNVISGTSMACPHATATAAYIKSFHPNWSPAMIKSALMTTVCKGDWVEKSSQPNVHIQNQYNIQLESSLSFEDIPK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2977 159 PANTHER CUCUMISIN-LIKE 15 130 - -
Ssu6g2977 159 SUPERFAMILY Subtilisin-like 33 129 IPR036852 GO:0004252|GO:0006508
Ssu6g2977 159 ProSitePatterns Serine proteases, subtilase family, serine active site. 89 99 IPR023828 -
Ssu6g2977 159 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 15 130 IPR045051 -
Ssu6g2977 159 Gene3D Peptidase S8/S53 domain 29 125 IPR036852 GO:0004252|GO:0006508
Ssu6g2977 159 Gene3D - 14 28 - -
Ssu6g2977 159 Pfam Subtilase family 35 124 IPR000209 GO:0006508|GO:0008236
Ssu6g2977 159 ProSiteProfiles Serine proteases, subtilase domain profile. 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2977 Ssu-Chr6 68324718 68328214 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2977 14 123 Subtilisin-like Serine Gene Family AT5G58830 59.091 1.01e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2977 - - vra:106763308 209.92