Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2976 ATGATAGCCGCTGCAAGCGACGCATTATATGCGAATGGAGCTGCATGTGGTCAAATGTATAAGATCACATGCACAGGTGCTACCAACCAGGGTGTGCCTCAGCCATGCAAGGGTGGCAGTGTTACGGTCAAGATTGTGGATCGTTGCCCTTCCCCAGGTTGCCAAGCCACCATTGATCTCTCCCAAGAAGCTTTCACTGCAATCGCTGACCCCAATGCtggaaaaattcaaattgactaCACAAAGGTGTGA 252 0.4762 MIAAASDALYANGAACGQMYKITCTGATNQGVPQPCKGGSVTVKIVDRCPSPGCQATIDLSQEAFTAIADPNAGKIQIDYTKV 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2976 83 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 1 83 IPR044206 GO:0009627|GO:0048046
Ssu6g2976 83 Gene3D - 1 83 IPR036908 -
Ssu6g2976 83 SMART dpbb_1 2 80 IPR007112 -
Ssu6g2976 83 SUPERFAMILY Barwin-like endoglucanases 1 83 IPR036908 -
Ssu6g2976 83 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 83 IPR007112 -
Ssu6g2976 83 Pfam Lytic transglycolase 3 80 IPR009009 -
Ssu6g2976 83 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN ISOFORM X2 1 83 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2976 1 82 Expansin Gene Family AT2G45110 34.409 8.80e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2976 - - vra:106764512 163.31