Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2968 ATGGCTCCTTCTTCAGACGTTAACCATCTTTCACATCCGTGCATATATGGGGATTATAGTTCTTCTCGCTCGGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAGCTTTTTAGAGGTGGGTCCAACAGAGGAAGGGGCGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATGGTTTGGGGTGCTCCATCTAGAGCGTTGGATGATGGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTTGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAACGCCCATCGAGGATATAGTTGGGGGGAAGACACTGGTGATGATTACTCAAAGGCACTTCAGGATACCCTTAACTCATCCTCACATCCTCCATGTGCCCCTACACCATTTTATCCCCACGAATATAGAAGACTATGTGGTGGCTGCAACCAAGAGATAATCTACGGAAATTGTTTGGGCTACATGGATACTTATTTTCATCCCAACTGCTTTCGTTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGTTTCCAATTTaTTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCGCGGAACATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCAATAACGGATACGGGTGATTGCCAGCCCCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAGCAAATTCCCATGCTTCTCGTTGAGAGAGAAGCACTCAACGAAGCTATTGAAGGGGAAAAGAATGGATTTCACCACTTACCAGAAACAAGGGGCTTATGTCTTTCAGAAGAGCAGACTGTCACCAGtATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCCTGGCTACGCCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCAAGCTTTCAAACCATGCCATCAACATCCACAGCTTCtgcttcttcctcctcctcctcaaaGAAGGGTGCAAAGTCTCAAGCTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCTAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTGATACACTTGAGCATATTCGTTTGACTGGTTTTTTTCCACTATAA 1515 0.4244 MAPSSDVNHLSHPCIYGDYSSSRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESMVWGAPSRALDDGARAQKEKEDLGHAMALSSAEDLKRPNAHRGYSWGEDTGDDYSKALQDTLNSSSHPPCAPTPFYPHEYRRLCGGCNQEIIYGNCLGYMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAITDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIEGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQTMPSTSTASASSSSSSKKGAKSQAENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRDTLEHIRLTGFFPL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2968 504 Gene3D Cysteine Rich Protein 128 199 - -
Ssu6g2968 504 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 504 - -
Ssu6g2968 504 Pfam Protein DA1 291 499 IPR022087 -
Ssu6g2968 504 CDD LIM_DA1 142 194 - -
Ssu6g2968 504 Pfam LIM domain 142 195 IPR001781 -
Ssu6g2968 504 PANTHER PROTEIN DA1-RELATED 2 20 504 IPR045218 -
Ssu6g2968 504 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Ssu6g2968 504 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Ssu6g2968 504 SMART lim_4 141 193 IPR001781 -
Ssu6g2968 504 MobiDBLite consensus disorder prediction 430 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2968 Ssu-Chr6 68099867 68104545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g2968 DA1-like 2.9e-101 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2968 - - gmx:100784976 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2968 6 68099867 68104545 Ssu6g2968 6 68099867 68104545 ECH
Ssu9g1529 9 51150644 51155381 Ssu6g2968 6 68099867 68104545 PCT