Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2967 ATGAAAGTCAAAGTTATATCACGCTCCGTGGATGAGTTCACCCGAGAACGAAGTCAAGACCTTCAGAGGGTGTTCCGGAATTACGATCCCAGCCTTCGTCCTCAAGAGAAGGCGGTGGAGTATGTGCGTGCTCTTAATGCAGTGAAGTTGGACAAGATTTTTGCAAGACCATTCATAGGAGCATTGGATGGGCATATAGATGCTGTTTCGTGTATGACGAAGAACCCTAGTCAGTTGAAAGGGATATTCTCCGGTTCAATGGATGGAGATATTCGTCTCTGGGATTTAGCTTCAAGacGAACAGTTTGTCAGTTTCCTGGTCACCAGGGTGCTGTACGAGGCTTGACAGCATCTACAGATGGACACATTCTTGTGTCTTGTGGCACTGATTGCACTATCAGACTCTGGAATGTTCCTATTACTACTCTTATGGAGTCAGACGACTCAACTAAGAGCACTGTTGAGCCAGCAAGTGTATATGTTTGGAAGAATGCATTTTGgGGTGCTGATCACCAATGGAATGGCGAGCATTTTGCCACAGCTGGTGCTCAAGTAGATATATGGAATCACAACAGGTCTCAGCCGATAAACAGTTTTGAATGGGGGACAGATACAGTAATTTCTGTCCGGTTTAATCCTGGAGAACCAGATCTCTTGGCCACTTCAGCTAGtgATCGGAGCATAATTCTGTATGATTTACGTATGGCTTCCCCAGTGAGGAAAATGATAATGATGACCAAAACCAATTCTATATCTTGGAACCCAATGGAACCCATAAATTTTACAGCTGCAAATGAAGATGGTAACTGCTATAGCTATGATGCTAGGAAGTTAGATGAAGCTAAATGTGTTCACAAAGATCATGTTTCTGCAGTGATGGATATTGACTACTCACCAACTGGACGAGAGTTTGTCACTGGATCTTATGATAGAACAGTGAGAATTTTCCAGTATAATGGTGGTCACAGCAAGGAGGTTTATCATACTAAGAGAATGCAAAGGGTATTTTGTGTCAAGTTCAGTGGCGATGGAAGCTATGTGATTTCAGGAAGTGATGACACTAACCTTAGGCTTTGGAAGGCAAAAGCATCAGAGCAACTTGGAGTAATTCTCCCAAGGGAGCGGAAGAAGCATGAGTATCACGAGGCCATAAAGAAACGTTACAGGCACCTCCCTGAAGTTAACCGTATTGCAAGACATAGACACTTGCCAAAACCAATATTCAAAGCTGCCGCGTTAATGCGCGTTATGGCGGATGCTAAGACaaggaaggaagagaagaggaaaGCTCACAGTGCTCCAGGGAGCATTACAACACAGGCATTACGGAGACGAAGAATTATCAAAGAAGTTGAGTAA 1359 0.429 MKVKVISRSVDEFTRERSQDLQRVFRNYDPSLRPQEKAVEYVRALNAVKLDKIFARPFIGALDGHIDAVSCMTKNPSQLKGIFSGSMDGDIRLWDLASRRTVCQFPGHQGAVRGLTASTDGHILVSCGTDCTIRLWNVPITTLMESDDSTKSTVEPASVYVWKNAFWGADHQWNGEHFATAGAQVDIWNHNRSQPINSFEWGTDTVISVRFNPGEPDLLATSASDRSIILYDLRMASPVRKMIMMTKTNSISWNPMEPINFTAANEDGNCYSYDARKLDEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSKEVYHTKRMQRVFCVKFSGDGSYVISGSDDTNLRLWKAKASEQLGVILPRERKKHEYHEAIKKRYRHLPEVNRIARHRHLPKPIFKAAALMRVMADAKTRKEEKRKAHSAPGSITTQALRRRRIIKEVE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2967 452 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Ssu6g2967 452 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Ssu6g2967 452 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Ssu6g2967 452 SUPERFAMILY WD40 repeat-like 56 360 IPR036322 GO:0005515
Ssu6g2967 452 Pfam Eukaryotic translation initiation factor eIF2A 223 322 IPR013979 -
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 369 IPR001680 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 98 - -
Ssu6g2967 452 SMART WD40_4 319 360 IPR001680 GO:0005515
Ssu6g2967 452 SMART WD40_4 192 232 IPR001680 GO:0005515
Ssu6g2967 452 SMART WD40_4 55 95 IPR001680 GO:0005515
Ssu6g2967 452 SMART WD40_4 278 317 IPR001680 GO:0005515
Ssu6g2967 452 SMART WD40_4 98 137 IPR001680 GO:0005515
Ssu6g2967 452 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Ssu6g2967 452 PANTHER NUCLEOTIDE BINDING 1 452 - -
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 317 - -
Ssu6g2967 452 Pfam Sof1-like domain 361 446 IPR007287 -
Ssu6g2967 452 Gene3D - 163 388 IPR015943 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 138 - -
Ssu6g2967 452 CDD WD40 59 360 - -
Ssu6g2967 452 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Ssu6g2967 452 Gene3D - 43 146 IPR015943 GO:0005515
Ssu6g2967 452 PANTHER U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN 1 452 - -
Ssu6g2967 452 Pfam WD domain, G-beta repeat 102 137 IPR001680 GO:0005515
Ssu6g2967 452 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Ssu6g2967 452 Pfam WD domain, G-beta repeat 325 360 IPR001680 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Ssu6g2967 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 360 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2967 59 319 Eukaryotic Initiation Factors Gene Family AT2G46290 20.702 1.51e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2967 K11806 - gmx:100812671 890.182