Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2966 ATGAGCACACAGGGGCAAGTGATTGATGAGGCGGTTCTCGACGACATAATCCGGCGCTTAACGGAGGTCCGATTGGCCCGACCCGGTAAGCAGGTTCAGCTCTCCGAGTCTGAGATCAAGCAGCTCTGCGTCGCTTCCCGAGACATCTTCCTTCAACAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGGGTTTGCCGCCTAATGCGAATTATCTCTTTTTAGGGGACTATGTGGACCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCGTATAAAATCAAATACCCGGAAAACTTTTTCCTGTTGAGGGGGAATCATGAGTGTGCTTCCATTAATAGGATTTATGGGTTTTATGATGAATGTAAGCGGAGGTTTAATGTGAGGCTTTGGAAAGCCTTTACCGACTGTTTTAATTGCCTTCCTGTGGCGGCCCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAACTTGGATCAAATCAGAAATCTTCCTCGTCCAACTGCGGTTCCCGACACTGGCTTGCTTTGTGATTTGCTTTGGTCTGATCCTGGTAGGGATGTGAAGGGTTGGGGTATGAATGATAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTTGCTGATAGGCAACTTGTTACAATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACAATGCTGGTGCGATGATGAGTGTGGATGATAACTTGATGTGCTCATTTCAGATTCTTAAGCCTGCTGAGAAAAAAGCAAAGTTTGTGATGTCAAACAAGATGTGA 948 0.4515 MSTQGQVIDEAVLDDIIRRLTEVRLARPGKQVQLSESEIKQLCVASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPNANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDCFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRPTAVPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDDNLMCSFQILKPAEKKAKFVMSNKM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2966 315 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Ssu6g2966 315 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Ssu6g2966 315 SUPERFAMILY Metallo-dependent phosphatases 22 308 IPR029052 -
Ssu6g2966 315 CDD MPP_PP1_PPKL 12 302 - -
Ssu6g2966 315 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Ssu6g2966 315 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 7 308 - -
Ssu6g2966 315 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 308 - -
Ssu6g2966 315 SMART pp2a_7 34 304 IPR006186 GO:0016787
Ssu6g2966 315 Gene3D - 5 313 IPR029052 -
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Ssu6g2966 315 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2966 Ssu-Chr6 68072723 68074403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2966 63 247 Calmodulin-binding Proteins AT5G63870 33.032 6.24e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2966 6 68072723 68074403 Ssu6g2966 6 68072723 68074403 ECH