Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2958 ATGAAGGCACTGATTCTGGTTGGGGGGTTTGGAACAAGGTTGAGGCCACTGACACTTAGTGTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCCCTTAAGGCCATTGGAGTTACTGAGGTGGTGCTAGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTATGAAGCAAAGCTTGGCATAAAGATCACATGTTCTCAAGAAACTGAACCACTAGGAACAGCAGGTCCCCTGGCTCTTGCTAGGGATAAGCTGATAGATGATTCTGGAGAACCCTTCTTTGTTCTCAACAGTGATGTTATCAGTGACTACCCACTTAAAGAAATGATTGCATTCCATAAGGCCCATGGAGGAGAGGCTTCCATAATGGTAACAAAGGTTGACGAGCCATCAAAATACGGTGTGGTTGTGATGGAGGAGACCACAGGGCAggttgataaatttgttgaaaaaccGAAATTGTTTGTTGGTAACAAAATCAATGCAGGAATTTACCTGCTGAACCCCTCTGTTTTGGATCGAATTGAACTGAGACCCACTTCTATCGAGAAAGAGGTGTTTCCAAATATTGCTGCTGAGAAAAAGCTATATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTTAGGCTTTACCTGGACTCGTTGAGGAAGAAGTCATCTTCTAAGTTGGCCAGTGGCTCTCACATTGTAGGAAATGTCATTGTGGATGAGACAGCCCAAATTGGAGAGGGATGTCTCATTGGACCTGATGTTGCTATTGGTCCTGGATGCATTATTGAGCCAGGTGTTAGACTCTCACGCTGCACAGTAATGCGAGGAGTCCGGATTAAGAAGCATGCTTGTGTATCCAGCAGTATTATTGGGTGGCATTCCACTGTTGGGCAATGGGCTCGAGTGGATAATATGACCATCCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGCGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAATATTCTGAAGCCAGAGATTGTCATGTGA 1086 0.4401 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDYEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISDYPLKEMIAFHKAHGGEASIMVTKVDEPSKYGVVVMEETTGQVDKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPNIAAEKKLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRKKSSSKLASGSHIVGNVIVDETAQIGEGCLIGPDVAIGPGCIIEPGVRLSRCTVMRGVRIKKHACVSSSIIGWHSTVGQWARVDNMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2958 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Ssu6g2958 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Ssu6g2958 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Ssu6g2958 361 Gene3D Hexapeptide repeat proteins 235 358 - -
Ssu6g2958 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Ssu6g2958 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Ssu6g2958 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Ssu6g2958 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2958 Ssu-Chr6 68002917 68004528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2958 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 22.798 1.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2958 K00966 - gmx:100808375 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2958 6 68002917 68004528 Ssu6g2958 6 68002917 68004528 ECH
Ssu9g1526 9 51097498 51100022 Ssu6g2958 6 68002917 68004528 PCT