Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2951 ATGGCTGGGATTTGCTGCGGCGTTGTTGGAGAGGCCGGAGAGACTCCTACTCCGATCGAGCCTACCTCGCGGCCTTCCCGTCGCCGGAGTTTGGACCTCTTACCGTTGAAGTACATAGCTGACGCGGCAATCCCGCCGCCGGAGAACAGCCGGAAGCGTCAGAAGCTGGACCGGCGCGCTTCTCCGGCGCCGCCGCGGGAGTGCGAAAACGCGGTTGAGAGATCCGAATCGAAGGGAGTTGAGGCCGTTTCTGTTTCACTTCCGAATTGTTCGAAGATTCCTACGCTAAACGTTGTCGAGGGGTGTCCGAGGTATGGGGTAACGTCGGTTTGCGGAAGGAGGAGGGACATGGAAGACGCCGTTTCCGTGCGTCCGTCGTTTTGCCTAGAAGATTGTGCTCAAGATCAAAAAGGGTTTCATTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACgtGGCGACTATGTGCAAGGAGAGGCTACACGAGATAGTGAAGGAAGAGGTTCACAAAGCGAAGGAGAATTTGGAATGGGAATCCACGATGAAGAAGTGTTTCGCTCGCATGGACGAAGAGGTGCAAGGGTGGGGCCAGAGCAACGAGACCCCCACTTGCAGGTGCGAGCTTCAAACTCCGCACTGCGACGCCGTCGGCTCCACCGCGGTCGTCGCCATCGTCACGCCGGAAAAGATCGTCGTCGCGAACTGCGGCGACTCACGCGCCGTGCTTTGCCGGAACAACGTGGCCGTCCCGCTCTCCGACGATCACAAGCCGGACCGACCCGACGAGTTGGTTCGGATAGAAGCCGCGGGAGGGCGCGTGATATATTGGGATGGGCCTAGAGTGCTTGGGGTGTTGGCCATGTCCAGAGCCATAGGGGACAATTATCTGAAGCCGTATGTTATTTCGGAGCCGGAGGTAACGGTAACGGAGCGGAGTGAGGAGGACGAGTGTTTGATACTAGGGAGCGATGGGCTTTGGGACACCGTTCAAAACGACACCGCGTGCAAGGTGGTGCGGATGTGTCTTAAAGCGCAGAAGCTGCCGTCGCCGCCGGCCTCTCCGGGGAGGGACTTGGCGGTGGACTGCTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACCAAGTTGGCGTTGGTGAGGCAAAGTTCCGACAATGTGAGCGTCGTGGTGGTTGATTTGAGGAGAGATCAACGTCGGCAAcaaaaggaattaattaatttgagtggCTTGATCAAACCGCCCAAAACCTAA 1257 0.5696 MAGICCGVVGEAGETPTPIEPTSRPSRRRSLDLLPLKYIADAAIPPPENSRKRQKLDRRASPAPPRECENAVERSESKGVEAVSVSLPNCSKIPTLNVVEGCPRYGVTSVCGRRRDMEDAVSVRPSFCLEDCAQDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEVHKAKENLEWESTMKKCFARMDEEVQGWGQSNETPTCRCELQTPHCDAVGSTAVVAIVTPEKIVVANCGDSRAVLCRNNVAVPLSDDHKPDRPDELVRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSEEDECLILGSDGLWDTVQNDTACKVVRMCLKAQKLPSPPASPGRDLAVDCSDKACSDASILLTKLALVRQSSDNVSVVVVDLRRDQRRQQKELINLSGLIKPPKT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2951 418 PANTHER ALPHABET, ISOFORM E-RELATED 25 401 - -
Ssu6g2951 418 MobiDBLite consensus disorder prediction 48 74 - -
Ssu6g2951 418 CDD PP2Cc 104 348 IPR001932 -
Ssu6g2951 418 Gene3D - 93 405 IPR036457 -
Ssu6g2951 418 SUPERFAMILY PP2C-like 100 396 IPR036457 -
Ssu6g2951 418 SMART PP2C_4 93 393 IPR001932 -
Ssu6g2951 418 MobiDBLite consensus disorder prediction 40 74 - -
Ssu6g2951 418 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 25 401 - -
Ssu6g2951 418 Pfam Protein phosphatase 2C 104 355 IPR001932 -
Ssu6g2951 418 ProSiteProfiles PPM-type phosphatase domain profile. 104 395 IPR001932 -
Ssu6g2951 418 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2951 Ssu-Chr6 67911037 67912736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2951 1 402 PP2C-type Phosphatase Gene Family AT3G11410 59.662 1.58e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2951 K14497 - gmx:100781388 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2951 6 67911037 67912736 Ssu6g2951 6 67911037 67912736 ECH
Ssu9g1516 9 50980871 50982389 Ssu6g2951 6 67911037 67912736 PCT