Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2945 ATGGCGAATCGTTGGTGGGCCGGGAACGTGGCCGTGAGGCCCAATGAACCCAACCCCTCGCTTCAGGTAAGAGAGCAAGACAAcggtgacaacaacaacaacaacgctACTCCCACCAACAGCGGCAACAGCAACACCAACAACGTTGTTGAGGACGACGACAACAACGCCTCCAACGAGCGCGACGGCGACGACCAGCACCTCGGCGGCGGTCGGCGGCCGCGCGGCAGGCCGCCGGGGTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATCACGAAGGAGAGCCCCAACTCGCTCCGCAGCCACATCCTGGAAGTCAGCGGCGGCAGCGACGTGGCGGAGTGTATTGCCACCTTCGCCACGCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCGTCGCCACCAACGTCACTCTCCGGCAGCCGGCGGCGCCGGGCGGGGTCATCAGCCTTCAGGGGAGGTTCGAGATTCTGTCGCTCTCCGGCGCGTTTCTGCCTGCGCCGTCGCCGCCGGAGGCCTCCGGGCTGACGGTGTACCTCTCCGGCGGGCAGGGGCAGGTGGTCGGCGGCAGAGTGGTGGGGCCGCTGGTGGCCTCCGGgccggtgatggtggtggctgCTACCTTTGCAAATGCTACTTATGAGAGGTTACCTTTGGATGATGAACAAGGTGAAGAGGACATGCAAGAGGTGAATGAAGGTGTTGGAAATGGAAACACTTCTTCTTCTCAGGTtgaacaacaacagcaacagcaGCAGCAACATGTTTCAATGGGGGTGTATAATTTGAACCCCAATTTGGTGCCTCATAATGGTGATGATGTGTTCTGGGGGCCTCCACCTCACCCTCCTCCTCCCGCTTcttattga 876 0.5765 MANRWWAGNVAVRPNEPNPSLQVREQDNGDNNNNNATPTNSGNSNTNNVVEDDDNNASNERDGDDQHLGGGRRPRGRPPGSKNKPKPPVVITKESPNSLRSHILEVSGGSDVAECIATFATRRHRGVSVLSGSGVATNVTLRQPAAPGGVISLQGRFEILSLSGAFLPAPSPPEASGLTVYLSGGQGQVVGGRVVGPLVASGPVMVVAATFANATYERLPLDDEQGEEDMQEVNEGVGNGNTSSSQVEQQQQQQQQHVSMGVYNLNPNLVPHNGDDVFWGPPPHPPPPASY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2945 291 Gene3D - 99 235 - -
Ssu6g2945 291 ProSiteProfiles PPC domain profile profile. 96 233 IPR005175 -
Ssu6g2945 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 224 - -
Ssu6g2945 291 MobiDBLite consensus disorder prediction 1 97 - -
Ssu6g2945 291 MobiDBLite consensus disorder prediction 54 72 - -
Ssu6g2945 291 MobiDBLite consensus disorder prediction 15 53 - -
Ssu6g2945 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Ssu6g2945 291 CDD DUF296 100 183 IPR005175 -
Ssu6g2945 291 MobiDBLite consensus disorder prediction 235 263 - -
Ssu6g2945 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 285 IPR014476 GO:0003680
Ssu6g2945 291 MobiDBLite consensus disorder prediction 225 291 - -
Ssu6g2945 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24 285 - -
Ssu6g2945 291 PIRSF ESCAROLA 13 288 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2945 Ssu-Chr6 67774847 67775722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2945 72 236 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 69.697 1.44e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2945 - - aprc:113874473 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2945 6 67774847 67775722 Ssu6g2945 6 67774847 67775722 ECH