Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2940 ATGACAGGGCTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACAAGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACCAGGCTACAACCCATTTTGCAGCAGTGCATAAGGTTTATGGTGCTAGTAACGTCTCCAAGCTATTGTCACACCTTCCAATCCATAATAGAAGTGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGCTGTGTTGCTCACATCTATGCATTGCAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATGCTCTTGGAAGTCTAATGGCAAATTCCACAGTTAGTGTTGTCAATTGTGGCAGTGTCCAAGCACCAATGAACTCAAACAacgaaatacaatataatattttgcaGCATGATGCTACAAGAACACAATATTGTCAAAATCATCTGGCTAATTTTCTTTCACAGGAAGGAAGTGCCACGGGCTACCAGAGTTTGGACTCACAGATGGATATAAAGCTTCCTAATGCACACGTGGAAGAACCTTCAATTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCATGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGAACTAG 657 0.417 MTGLGSSCGACKFLRRKCTSDCVFAPYFSYDQATTHFAAVHKVYGASNVSKLLSHLPIHNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDALGSLMANSTVSVVNCGSVQAPMNSNNEIQYNILQHDATRTQYCQNHLANFLSQEGSATGYQSLDSQMDIKLPNAHVEEPSIGDSNSNPLEQFLSGIDQEVFMNHPWFKHNADIKN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2940 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Ssu6g2940 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Ssu6g2940 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 216 - -
Ssu6g2940 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2940 Ssu-Chr6 67742988 67743941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2940 1 114 AS2 family AT5G06080 73.684 7.36e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g2940 LOB 3.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2940 K13945 - gmx:100787638 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2940 6 67742988 67743941 Ssu6g2940 6 67742988 67743941 ECH