Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2937 ATGGCCAAAACGCTCATTCTTCTCTACGCCGTCCTCTTGGCCACGATCCCCGCAAGGTCACAGCAGCAGCAAGAGCTTTTCTTCGAAGGCTTCGGAGGCGCCGCCAACAACATAAGCACAAGCGGAGTCGCAGCAATCGAAGCCAACGGCAGCATACTCCGCCTCACAAACGGCACTCACAAACTCGGCCACGCCTTCTACTCCGCCCCGATCAGGTTCAAGAACTCCGCCGACGGCGACGTTCTCTCGTTTTCCACCGCGTTCGCCTTCGCGATAAGAAGCCGCGACCCAAAACGAGGTGGCCACGGCCTCGCCTTCGCGGTTTCCCCCTCGAAAGAGCTCCGGGGCGCGTTCCCCGGCCAGTACCTCGGCCTCTTCAAGCCCCACGACGTCGGAAACTTCTCCGACCACGTTTTCGCGGTCGAGTTCGACACTGTCCTCGACTACGAATTATACGACATCAACGACAACCACGTGGGCGTCAACGTCAACAGCGTGGTGTCCAACAAGTCTGTTCCCGCGGCACAGTTCACCGACGGGTCATCCAAGCAAGAGCTCAATTTGAAGTCCGGCAAAGTCATTCAGGCATGGGTGGACTATAATTCCTCTGAGAAACAATTAGATGTTAGACTCTCCTTAACCTCGTCCAAACCTGGTTCCCCAATCTTGTCTTGCCAACTCGATCTCTCGCCAATTTTCCACGAGAACATGTATGTCGGGTTTTCAGCTTCAACGGGGTTGCTGGCAAGTTCGCACTACGTCCTGGGTTGGAGCTTTAAGATGAACGGAGAAGCCAAATCTCTGCATTTGGAAACATTGCCATCACTCCCCACctctaagaaaataaaaaacgcCACGATCTTGGGGGTCACTGTTTCTGTTGTTATTTTTGCAATCATAGCTGCAACCGGGTTCGCGATTTATGTGGTGAGAAAGATGAAGAATGCCGATGCTATTGAACCGTGGGAGCTTGGAGTTGGTCCTCACAGGTTCTCATACAAGGAGCTGAAACAAGCAACGAGAGGGTTCAAAGAGAAACAGCTAATAGGGTTCGGGGGTTTCGGTCGAGTTTACAAAGGAATTCTCGCAGATTCCAACACGGAAGTCGCGGTGAAGAGAATCACGCAGGACTCGAAAGAAGGGTTGCAACAATTCATGTCGGAGATTGAGACCATTGGTCGGCTCCGACACAGGAACATAGTTCAACTACGAGGTTGGTGTCGTAAACGGCAAGATCTTTTGCTCGTGTATGATTTCATGCCGAATGGAAGTTTGGACAAGTACCTATTCGACCAACCAAGAAGAATTTTAAGCTGGGAGCAGAGGTTTAAGATTGTAAAGGGCGTGGCGTGGGGTTTGGTGTATTTGCACGAGGAGTGGGAGCAAGCGGTGATTCATAGAGACATAAAAGCCGGGAATGTGCTGTTGGATTCGGAAATGAATGGGAGGGTTGGGGATTTCGGTTTGGCGAAGATGTACGAACACGGGGAGAACCCGAACACCACGCGCGTGGTGGGCACCTTGGGCTACTTGGCGCCGGAGTTGACGCGCACGGGGAAGCCCACGACGAGTTCCGATGTGTTTGCGTTTGGGGCTTTGTTGTTGGAGGCGGCGTGCGGGAGAAGGCCCTTTGAGCCCAAGGCCTTGCCGGAGGAGCTTATTCTGGTTGACTGGGTGAGGGACAGGTGGCGCGTGGGTCGGGTTTTGGACACCGTGGATTCTAAGTTGGGTGGGGTGTTTGATCGGGGGCAGGCTTTGATGGTGCTGAGATTGGGCCTGATGTGTTCCAATGACGGCCCGGAGGAGCGGCCCAGTATGAGGCAGGTGGTGATGTATTTGGAGGGGGAGATGCAGCTTCCGGAGGATGGTGGCGGTGAAGTTGAGGGGTTAGGGCATTCGTGTACGACGGCGTCGTTTTATGATAGGGTGAGCATGTGGTCTTGTACCCCCGAGGATGTTGACGCTTCCTCGCTTTCACTTTCCGGTGACCCGGAGGGGAGGTAG 2004 0.5359 MAKTLILLYAVLLATIPARSQQQQELFFEGFGGAANNISTSGVAAIEANGSILRLTNGTHKLGHAFYSAPIRFKNSADGDVLSFSTAFAFAIRSRDPKRGGHGLAFAVSPSKELRGAFPGQYLGLFKPHDVGNFSDHVFAVEFDTVLDYELYDINDNHVGVNVNSVVSNKSVPAAQFTDGSSKQELNLKSGKVIQAWVDYNSSEKQLDVRLSLTSSKPGSPILSCQLDLSPIFHENMYVGFSASTGLLASSHYVLGWSFKMNGEAKSLHLETLPSLPTSKKIKNATILGVTVSVVIFAIIAATGFAIYVVRKMKNADAIEPWELGVGPHRFSYKELKQATRGFKEKQLIGFGGFGRVYKGILADSNTEVAVKRITQDSKEGLQQFMSEIETIGRLRHRNIVQLRGWCRKRQDLLLVYDFMPNGSLDKYLFDQPRRILSWEQRFKIVKGVAWGLVYLHEEWEQAVIHRDIKAGNVLLDSEMNGRVGDFGLAKMYEHGENPNTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEAACGRRPFEPKALPEELILVDWVRDRWRVGRVLDTVDSKLGGVFDRGQALMVLRLGLMCSNDGPEERPSMRQVVMYLEGEMQLPEDGGGEVEGLGHSCTTASFYDRVSMWSCTPEDVDASSLSLSGDPEGR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2937 667 CDD STKc_IRAK 349 615 - -
Ssu6g2937 667 CDD lectin_legume_LecRK_Arcelin_ConA 28 263 IPR001220 GO:0030246
Ssu6g2937 667 Gene3D Transferase(Phosphotransferase) domain 1 420 624 - -
Ssu6g2937 667 SUPERFAMILY Protein kinase-like (PK-like) 325 616 IPR011009 -
Ssu6g2937 667 Gene3D - 24 262 - -
Ssu6g2937 667 PANTHER - 5 633 - -
Ssu6g2937 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Ssu6g2937 667 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 5 633 - -
Ssu6g2937 667 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2937 667 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Ssu6g2937 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 278 IPR013320 -
Ssu6g2937 667 Pfam Protein kinase domain 343 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2937 667 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Ssu6g2937 667 Pfam Legume lectin domain 26 273 IPR001220 GO:0030246
Ssu6g2937 667 ProSiteProfiles Protein kinase domain profile. 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2937 Ssu-Chr6 67702088 67704091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2937 1 662 Receptor kinase-like Gene Family AT3G55550 56.388 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu6g2937 Pkinase 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2937 - - zju:107413402 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2937 6 67702088 67704091 Ssu4g2189 4 50707530 50709590 ECH
Ssu3g1273 3 31300183 31302207 Ssu6g2937 6 67702088 67704091 ECH
Ssu4g2189 4 50707530 50709590 Ssu6g2937 6 67702088 67704091 ECH
Ssu6g2937 6 67702088 67704091 Ssu6g2937 6 67702088 67704091 ECH