Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2935 ATGGCTTCAAACTCCCACAACAATAACAAGgaaaattcttcttcttggaCTCCCATGCAGAACAAACAATTCGAAAGCGCACTTGCCTTGTATGATCAAGACACCCCGGATCGATGGCAAAACATAGCCAAAGTAGTTGGTGATAAATCAGCCGAGGAAGTGAAGAGACACTATGAAATCCTCTTGGAGGACCTTAGGCATATAGAGTCTGGACGTGTTCCAATTCCCAGCTATAAGTCCACAGATAATAATGAAAGATAG 261 0.4023 MASNSHNNNKENSSSWTPMQNKQFESALALYDQDTPDRWQNIAKVVGDKSAEEVKRHYEILLEDLRHIESGRVPIPSYKSTDNNER 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2935 86 CDD SANT 15 62 IPR001005 -
Ssu6g2935 86 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g2935 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Ssu6g2935 86 SMART sant 12 64 IPR001005 -
Ssu6g2935 86 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Ssu6g2935 86 Gene3D - 7 75 - -
Ssu6g2935 86 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Ssu6g2935 86 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Ssu6g2935 86 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2935 Ssu-Chr6 67670896 67671156 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2935 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2935 - - gmx:100788168 166.392