Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2932 ATGCCGATATGTCCCGAATGCGACAGCGGATTCGTCGAAGAGGTCGAACCTCAGAACCGGTCCGTCCACGTGGAAACCCGTCGCCGTAGGTTCCCGACGGCGGCGGCCATGTACATGATCGGCCACCGTTCGGGTTCCGACCACAACCCTCGTTCCTCCCGCCGCCAGCATTGCCTGACCGCCACCGCCGACCGGTCACCGCTCAACCCGGTCATCATGCTCCGCGGAGAGGGGACAAGCCGCGACCGcagcggcggcggcggcggcttCGACCTTTTCTACGACGACGGCGCCGGTTCCGGCCTCCGACCCCTCGCTCCGAGGATGTCGGAGTTTCTCCTCGGAACCGGCTTCGACCGCGTGATGGAACAGCTTTCCCACGTGGAAGCCAACAACGGCGTCGGGCGCCccgaccaccaccaccaccaccaccacgccCCGGCTTCGAAATCCGCGGTGGAGTCCCTGCCGGCGATTGAGATCGACGCGACCCACATGGCGGTTGAGTCACACTGCGCGGTTTGCAAAGAGCCGTTTGAATTTTCAACCATCGCCAAAGAAATGCCGTGTAAGCACATATACCACCCGGAGTGCATCTTGCCGTGGCTCGAGATTCGAAACTCGTGCCCCGTGTGTCGGCACGAGTTGCCCTCTGAAACCGCACGTGCGGGGTTGGAGCCcgtggaggaggaggaggaagaagagaacGTGGGGCTGACGATTTGGAGGCTACCGGGCGGAGGGTTTGCGGTGGGGAGGTTTGGGAGAAGAGGGAGCGAGAGGGAGGTCAACGTTCCTCTCGTGTACACGGAAGTGGATGGTGGGTTTAACAACGTTGTGGTTGAGCCGAGGAGGGTTTCTTGGTCGGTTTCGGAGTCTAGAGGGAGGGGAAGAGGTGGTGCGTTGAGGAGAATGTTTAACGGTTTGTTTGGTTGCTTGAGAGGTGGGGCCAGGCCTCAAACTTCGTCGTCTGCTTCTAATGCTACTACCATAGAGTTCTCGAGCAGCGTGAGGAGTACTAATGTTAGGGCGTCTCGTTCTAACGTGGTTCCTTCCCCACCTTCGCGTAGGACTTGGTCTATGGATGTCAACGGTGGAACGAGACCATGGTGA 1113 0.5562 MPICPECDSGFVEEVEPQNRSVHVETRRRRFPTAAAMYMIGHRSGSDHNPRSSRRQHCLTATADRSPLNPVIMLRGEGTSRDRSGGGGGFDLFYDDGAGSGLRPLAPRMSEFLLGTGFDRVMEQLSHVEANNGVGRPDHHHHHHHAPASKSAVESLPAIEIDATHMAVESHCAVCKEPFEFSTIAKEMPCKHIYHPECILPWLEIRNSCPVCRHELPSETARAGLEPVEEEEEEENVGLTIWRLPGGGFAVGRFGRRGSEREVNVPLVYTEVDGGFNNVVVEPRRVSWSVSESRGRGRGGALRRMFNGLFGCLRGGARPQTSSSASNATTIEFSSSVRSTNVRASRSNVVPSPPSRRTWSMDVNGGTRPW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2932 370 SUPERFAMILY RING/U-box 152 219 - -
Ssu6g2932 370 Pfam Protein of unknown function (DUF1117) 237 340 IPR010543 -
Ssu6g2932 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 219 IPR013083 -
Ssu6g2932 370 MobiDBLite consensus disorder prediction 344 362 - -
Ssu6g2932 370 MobiDBLite consensus disorder prediction 131 153 - -
Ssu6g2932 370 Pfam Ring finger domain 171 213 IPR001841 -
Ssu6g2932 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 312 - -
Ssu6g2932 370 SMART ring_2 172 212 IPR001841 -
Ssu6g2932 370 CDD RING-H2_RNF181 172 216 - -
Ssu6g2932 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 312 - -
Ssu6g2932 370 MobiDBLite consensus disorder prediction 344 370 - -
Ssu6g2932 370 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2932 Ssu-Chr6 67604011 67605123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2932 104 219 C3H Transcription Factor Family AT5G01980 40.517 2.04e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2932 - K11982 gmx:100789228 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2932 6 67604011 67605123 Ssu6g2932 6 67604011 67605123 ECH