Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2924 ATGGCTTCGGTCAACAAAATCATCGCCGGCATTGTCTGCATCGTAACCGCTCTGACCATAACCGAGGCCAGAATCCAGGGCGCGTACAGCGGCGGCGCGTGGGAGAGCGCGCACGCGACGTTCTACGGCGGGAGCGACGCGTCGGGCACAATGGGGGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGGTACGGCGTGAACACGGCGGCGCTGAGCACGGCGCTGTTCGACAACGGGTTCAGTTGCGGGGCGTGCTTCGAGATAAAGTGCGCCAACGACCCCAGCTGGTGCCACGCTGGCAGCCCCTCCATCTTCGTAACCGCCACAAACTTCTGCCCCCCAAACTACGCGCTCCCCAGCGACAATGGAGGGTGGTGCAACCCTCCCAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCAGAGTACCGCGCCGGCATCGTCCCTGTTTCTTACCGCAGGGTACCTTGTCGGAAGCAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCTGGCGCAGGGGATATCGTGAGGACGAGCGTGAAAGGGTCAAAGACTGGGTGGATGAGCATGAGCCGCAACTGGGGTCAGAACTGGCAGTCAAACGGTGTTCTGGTTGGTCAGTCACTGTCCTTCAGGGTCACAGCCAGTGACCGACGCACCTCCACCTCGTGGAACATTGTTCCCGCCAGCTGGCAATTTGGCCAGACCTTCACCGGCAAAAATTTCAGGGTCTAA 783 0.6054 MASVNKIIAGIVCIVTALTITEARIQGAYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFDNGFSCGACFEIKCANDPSWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNGVLVGQSLSFRVTASDRRTSTSWNIVPASWQFGQTFTGKNFRV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2924 260 Gene3D - 167 258 IPR036749 -
Ssu6g2924 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Ssu6g2924 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Ssu6g2924 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Ssu6g2924 260 Gene3D - 18 162 IPR036908 -
Ssu6g2924 260 PANTHER EXPANSIN-A15 7 259 IPR002963 GO:0009664
Ssu6g2924 260 SMART dpbb_1 69 156 IPR007112 -
Ssu6g2924 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Ssu6g2924 260 PANTHER EXPANSIN-A6 7 259 - -
Ssu6g2924 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Ssu6g2924 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Ssu6g2924 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Ssu6g2924 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2924 Ssu-Chr6 67389356 67392030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2924 8 260 Expansin Gene Family AT2G39700 82.609 4.24e-162 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2924 - - gmx:100809018 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1304 3 32363656 32368062 Ssu6g2924 6 67389356 67392030 ECH
Ssu8g0455 8 7215068 7216179 Ssu6g2924 6 67389356 67392030 ECH
Ssu3g2636 3 79943312 79945672 Ssu6g2924 6 67389356 67392030 ECH
Ssu6g2924 6 67389356 67392030 Ssu6g2924 6 67389356 67392030 ECH
Ssu9g1481 9 50165265 50168018 Ssu6g2924 6 67389356 67392030 PCT