Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2917 atggcaATTGGGTTCATGGAGGTGCTGCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATATCTTTGCTCACATGGATCCATATGTTCTGTTACAATACAAAGGTCAAGAGCGTAAGAGCAGTGTAATTCATGAGGGGGGAAGCAATCCCATATGGAATGAGAAATTTGTATTCAGAGTGGAATACCCTGGATCAGGTGATCAATACAAGCTCAACCTTAGAATCATGGACAAGGACGTATTTTCTGCAGATGACTTTGTTGGCCAGGCTACAGTCTATGTAAAGGATTTATTGGCAGAAGGAGCAGAGAATGGATCATCTGAGCTTCGTCCTCACAAGTATAGTGTGGTTCGAGCTGACCAATCTTATTGTGGTGAAATTGAAGTTGGTATAACTTTCACCCGGAAGGAAGAGGAATATATTGACGATGAAGTTGGAGGATGGAAGGAAAGTTGCTTTTAG 462 0.4156 MAIGFMEVLLVKAKGLQETDIFAHMDPYVLLQYKGQERKSSVIHEGGSNPIWNEKFVFRVEYPGSGDQYKLNLRIMDKDVFSADDFVGQATVYVKDLLAEGAENGSSELRPHKYSVVRADQSYCGEIEVGITFTRKEEEYIDDEVGGWKESCF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2917 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Ssu6g2917 153 SMART C2_3c 5 106 IPR000008 -
Ssu6g2917 153 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Ssu6g2917 153 Gene3D C2 domain 2 135 IPR035892 -
Ssu6g2917 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Ssu6g2917 153 Pfam C2 domain 7 105 IPR000008 -
Ssu6g2917 153 PANTHER 16 KDA PHLOEM PROTEIN 1 1 153 - -
Ssu6g2917 153 PANTHER INGRESSION PROTEIN FIC1 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2917 Ssu-Chr6 67289891 67292585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2917 3 109 C2H2 Transcription Factor Family AT4G21160 29.907 2.30e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2917 - - gmx:100500493 306.219