Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2916 ATGCGGCGGAACAGTCCGGGATACTACAGTCCTCCTCGGCGAGGATACGGTGGCCGAGGAGGAGGGTCCGGCAGGAGGGGATACGGTGGGGGCAGGCGCAGGGACAGCAACCATGGAAGCCTCTTAGTTCGGAACATTCCTCTCGATTGCAGACCCGAGGAACTTCGTGTTCCTTTCGAGCGATTTGGACCCGTTCGCGATGTTTACATTCCCAAGGACTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATTCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTGGTTGTGGCTGAAGAGACAAGAAAAAGACCGGAGGAGATGCGCCACAGGACTAGGCTCAGAGGACCAGCGGGCTATGGAGGGCAAAGGTCTTCTCGTTACGGGCGTTCTCGATCTCGCTCAATTACCAGATCACGCTCACCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGTCCTATTCTCCTGCTCCGAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCCTAGATCACCAAGAGGTCCTCCCGGGGAGCGAGATGATGATCAAAAGCGTAGGTCCTATTCTCCTGCTTATGGAAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATCGTGATCGAGGCCAGTGGAAGTCATCAAGATCACCCCTTGGATCTAGATCAAGATCTGCTGATTTGTCACCCAGACGTGCAAGATAA 810 0.5111 MRRNSPGYYSPPRRGYGGRGGGSGRRGYGGGRRRDSNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRLRGPAGYGGQRSSRYGRSRSRSITRSRSPPYHSGSRNRYRSRSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPGERDDDQKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRDRGQWKSSRSPLGSRSRSADLSPRRAR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2916 269 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Ssu6g2916 269 SMART rrm1_1 40 113 IPR000504 GO:0003723
Ssu6g2916 269 PANTHER OS02G0252100 PROTEIN 23 268 - -
Ssu6g2916 269 MobiDBLite consensus disorder prediction 218 233 - -
Ssu6g2916 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Ssu6g2916 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Ssu6g2916 269 MobiDBLite consensus disorder prediction 186 213 - -
Ssu6g2916 269 MobiDBLite consensus disorder prediction 1 39 - -
Ssu6g2916 269 MobiDBLite consensus disorder prediction 118 269 - -
Ssu6g2916 269 Gene3D - 31 156 IPR012677 -
Ssu6g2916 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 268 - -
Ssu6g2916 269 MobiDBLite consensus disorder prediction 143 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2916 Ssu-Chr6 67282950 67285864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2916 21 101 Eukaryotic Initiation Factors Gene Family AT3G11400 37.037 3.75e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2916 K12900 - gmx:100792397 406.757