Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2913 ATGGGGTGCTGCTTCAGTGCCAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGAATGGTAAAAAGGAAGAGGATGGCTTGAGTGGCTTAAGCAGCAAGGTCTCCACTCCCTCCATGCCTCCAACTCCGCGGACAGAGGGTGAGATCTTGAAGTCCTCCAATATGAAGAGCTTCACCTTCAGTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTTTTTAAGGGGTGGATTGATGAGCAGTCACTTGCACCAGTTAGACCAGGGACTGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGGTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAGCGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTATTTAGGAGAGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAAGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTTAAGGCTTCAAATATCTTGCTTGATTCAGCTGAAATTGACTAG 672 0.4539 MGCCFSARIKAESPPRNGLSSKNGKKEEDGLSGLSSKVSTPSMPPTPRTEGEILKSSNMKSFTFSELKTATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQVHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSAEID 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2913 223 SUPERFAMILY Protein kinase-like (PK-like) 46 219 IPR011009 -
Ssu6g2913 223 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Ssu6g2913 223 Gene3D Transferase(Phosphotransferase) domain 1 160 221 - -
Ssu6g2913 223 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Ssu6g2913 223 ProSiteProfiles Protein kinase domain profile. 74 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2913 223 MobiDBLite consensus disorder prediction 33 55 - -
Ssu6g2913 223 MobiDBLite consensus disorder prediction 8 55 - -
Ssu6g2913 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Ssu6g2913 223 Pfam Protein tyrosine and serine/threonine kinase 78 220 IPR001245 GO:0004672|GO:0006468
Ssu6g2913 223 PANTHER KINASE 1B 23 219 - -
Ssu6g2913 223 PANTHER OS01G0588500 PROTEIN-RELATED 23 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2913 Ssu-Chr6 67268880 67271061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2913 1 218 Glycoside Hydrolase AT3G07070 41.485 1.34e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g2913 PK_Tyr_Ser-Thr 2.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2913 - - gmx:100775335 416.387