Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2908 ATGAGAAAACCTTGTTGTGACAAAGAAAGCATCAATAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATCCGAGTTCATGGTGAAGGCTGTTGGCGTTCCATTCCTAAAGCTGCCGGGCTTCATCGTTGTGGCAAAAGCTGTAGGCTAAGATGGTTAAACTACTTACGACCGGACATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTCATCATCAAACTCCACGCCCTCCTTGGTAACAGgTGGTCACTGATTGCTGGAAGGTTGCCTGGAAGGACAGACAATGAGGTCAAGAACTACTGGAATTCTCACATTCGCAGAAAACTAATAAAGATGGGAATTGATCCAAACAACCATAAGCCACACCAAAGCTTTCCTCGTCCTTATGCTTCTGCTGAGGGTGCATCAACATCTGAGTCCATGAACAAAGAGCATCAAGTCCCTTTCTTCAAATCCCGTGGTGCTGCGACTGATAGGATTTCAATCACAAAGAGCCTTGCAGAAGAAACAACAATTATTTCGTCACGGGCTTTGAATCTTGACCTAACAATTGCTTTACCTTCGCCTGTACAAAATTCTGCAGAGTCTGCCAAGACTTGGGACATGGATATAGATCTCAACTGTTAG 645 0.4419 MRKPCCDKESINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFPRPYASAEGASTSESMNKEHQVPFFKSRGAATDRISITKSLAEETTIISSRALNLDLTIALPSPVQNSAESAKTWDMDIDLNC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2908 214 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 203 - -
Ssu6g2908 214 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Ssu6g2908 214 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ssu6g2908 214 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ssu6g2908 214 Gene3D - 68 133 - -
Ssu6g2908 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Ssu6g2908 214 CDD SANT 71 111 IPR001005 -
Ssu6g2908 214 SMART sant 65 113 IPR001005 -
Ssu6g2908 214 SMART sant 12 62 IPR001005 -
Ssu6g2908 214 CDD SANT 15 60 IPR001005 -
Ssu6g2908 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Ssu6g2908 214 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ssu6g2908 214 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Ssu6g2908 214 PANTHER MYB TRANSCRIPTION FACTOR 2 203 - -
Ssu6g2908 214 Gene3D - 13 65 - -
Ssu6g2908 214 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2908 Ssu-Chr6 67214448 67216366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2908 2 196 MYB Transcription Factor Family AT4G38620 54.327 1.54e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2908 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2908 K09422 - gmx:100306391 362.459