Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2902 ATGGACGCTCCTCCACCGGAGGCGGAGGTTACGGCGGTGGCCGTGCGGCGAGCCCTGGAGCTGCTGCAGCTGAACGACCCCGTTTTGATGGTCCAAGCCGCGAGGGACATACGGCGCCTCACCAAGACCTCCCACCGGTGCCGCCGCCAGCTCCGTCAAGCCGTCGCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTTGCTCTGCTTAACCTCGCCGTGCAAGACGAAAAgaataaaattaacattgtggAAGCTGGTGCATTGGAGCCAATAGTTAGTTTCCTCAAGTCACAGAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTGTCTGTCTCTCCAACCAACAAACCAATAATTAGTGCTTGTGGCACCATTCCTCTTCTTGTGAATATTCTTAGAGATGGAAGTCCACAAGCTAAAGTTGATGCTGTAATGGCTCTATCCAATTTATCAGCACACCCTGAAAACCTCAGCATCATTCTCGAAAAAAATGCAATGCCTTTTATAGTTAATCTTCTCAAAACTTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGCTTTGATAGAATCCTTGGTGAGTTATGAGGAGGGCAGAACCACCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAGATTCTTGAAAATGGTACTCCCCAAAGTAGGGAACATGCTGTTGGAGCACTGCTGACAATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATTCTTAGAGAGGGTGTTATTCCGGGACTTCTTGAGCTTACAGTTCAAGGAACCCCCAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAGTTACTAAGAGAGTCTCCATATTCCAGACCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCCCAGATTGATGGGGATGATCAATCGGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAACAAAGGGCTCTTGTATGTACCCCTAGTGATATGCCTATTACAAGTTGTGCCTCTGAAGTTTCTTCAAAGTAA 1110 0.4676 MDAPPPEAEVTAVAVRRALELLQLNDPVLMVQAARDIRRLTKTSHRCRRQLRQAVAPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKINIVEAGALEPIVSFLKSQNPNLQEYATASLLTLSVSPTNKPIISACGTIPLLVNILRDGSPQAKVDAVMALSNLSAHPENLSIILEKNAMPFIVNLLKTCRKSSKIAEKCSALIESLVSYEEGRTTLTSEEGGVLAVVEILENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2902 369 PANTHER U BOX DOMAIN-CONTAINING 8 352 - -
Ssu6g2902 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 95 IPR000225 GO:0005515
Ssu6g2902 369 Gene3D - 4 351 IPR011989 -
Ssu6g2902 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 178 IPR000225 GO:0005515
Ssu6g2902 369 SMART arm_5 125 165 IPR000225 GO:0005515
Ssu6g2902 369 SMART arm_5 166 208 IPR000225 GO:0005515
Ssu6g2902 369 SMART arm_5 209 250 IPR000225 GO:0005515
Ssu6g2902 369 SMART arm_5 84 124 IPR000225 GO:0005515
Ssu6g2902 369 SMART arm_5 43 82 IPR000225 GO:0005515
Ssu6g2902 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 132 IPR000225 GO:0005515
Ssu6g2902 369 Pfam Armadillo-like 96 171 IPR006911 -
Ssu6g2902 369 SUPERFAMILY ARM repeat 14 304 IPR016024 -
Ssu6g2902 369 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 177 221 IPR000225 GO:0005515
Ssu6g2902 369 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2902 Ssu-Chr6 67110672 67114422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2902 15 292 U-box Gene Family AT2G23140 32.857 1.21e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2902 - - gmx:100793971 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1463 9 49934742 49938405 Ssu6g2902 6 67110672 67114422 PCT