Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2901 ATGGCACTCTCCTTGACATCTCATGAGGTCCATGAGTATCAAAAATCTGTGGTTGAAGAGGAAGATGGTTCACTGAGCACTAATGGGCTCAGCAATGATTCAGCTTCGGCCATAACCCATTCTCCTCCTCTATGTGGCAATGGCAATGGGTACGTTCATAAGAGCACAAATCACCAACTTGAAGAAGCAGAATCATTGATTAATTTCGAAGCCAATGTGTACAACAGCCTCATGCAAGGTAGTGAATCTTTTCTTAGCTTTCAGCAGAGTTGGCTCTTCTCCAAAGAGAGTAATTTGCATGAAGGTTACAACCAATGGAACCAAGTTAGTCCTAGAAGCACGACAGACATGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACTGCCACTGGCTATAGCTCCATTTTCAATGGTGCAAAAGAGAAGCAACGTGGTGAAAGTTCATCATCTGGGTGGCTATACTCGGAATCAAATGTCCCTAGTGATAGCCTGCATGAAGCAGCACAAGAATTGGTCTTGAGAAAGCGCTCTTCTATGgGAGAGAACATGCAAGCTGCCAATGCCAAGAAGCCATGCACAACTGCAAGTAAAGCAGCAAAACCAAAGTCAAACCCATCCAAGGATCCTCAAAGTGTTGCTGCCAAGaatagaagagagagaataagtgAGCGGCTTAAGATACTTCAAGAACTGGTCCCCAACGGCTCCAAGGTTGATTTGGTCACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGCCCAAGGTGGAAAAGCCCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 879 0.4323 MALSLTSHEVHEYQKSVVEEEDGSLSTNGLSNDSASAITHSPPLCGNGNGYVHKSTNHQLEEAESLINFEANVYNSLMQGSESFLSFQQSWLFSKESNLHEGYNQWNQVSPRSTTDMRLVQNFSCFETATGYSSIFNGAKEKQRGESSSSGWLYSESNVPSDSLHEAAQELVLRKRSSMGENMQAANAKKPCTTASKAAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPAQGGKAPDISQVRQAIDAILSSQR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2901 292 MobiDBLite consensus disorder prediction 182 211 - -
Ssu6g2901 292 MobiDBLite consensus disorder prediction 182 217 - -
Ssu6g2901 292 Pfam Helix-loop-helix DNA-binding domain 215 255 IPR011598 GO:0046983
Ssu6g2901 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 290 - -
Ssu6g2901 292 SMART finulus 211 260 IPR011598 GO:0046983
Ssu6g2901 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 265 IPR036638 GO:0046983
Ssu6g2901 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 290 - -
Ssu6g2901 292 Gene3D - 200 262 IPR036638 GO:0046983
Ssu6g2901 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Ssu6g2901 292 CDD bHLH_AtIND_like 206 268 - -
Ssu6g2901 292 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2901 Ssu-Chr6 67072256 67073687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2901 47 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.036 2.25e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g2901 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2901 - - gmx:106795957 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1462 9 49896611 49898120 Ssu6g2901 6 67072256 67073687 PCT