Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2898 ATGAGTTTCTGTTCCTCTCAAGGAATCTGTTCTGATGACACCAAGGATGCTTCCAATGCACACGTTTCCTCTGTTGTTGGAAATGACTTTTCTGACCACAAAAGGCTCAAACTCGGAACCTTTTTGAGAAAAACGATGTGGGACTTTGCCTGGGCATGTGTTGGTGTTCCTTGTGGTGGCAGTAACGACCTTAACGGTCTCAGAAAGACAACTCTGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGGCAAGTGCTGACCCTCAATCGGTTCACTCATCTTTCAGGTTCAGCTTCTGTTCTCAGGTTGAGGTTGAGTCCTTCAACACGAGTtattctgcttctgctgctgctgctgctgcaaCTGTTTTGATGGTCAATTTGGAATATGAGTCTCAAGTGAGGGAGCTGAAATGGAAGAGAGTACAGTCATTGGAGAAAAGTATATCTCCAGTGGTCAACACTTTGATCAGATTCAGCTATGATGAAATTGTATCCGCTACTCGCAATTTCTCCAAAGGGAGAGTGTTGGGGAGAGGTGCCTTGAGCTGTGTTTTTAGAGGAAGAGTTGGGCTTTGGAGGACTGCTGTTGCTATTAAAAGGTTGGATAAGGAAGACAAGGAGTGTGCCAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAACGTTGTTCCCCTTGTGGGTTTTTGTATTGACTCAGAGGAGGGTTTGTTTTTGGTGTACAAGTATGTGTCAGGGGGCAACTTAGAGCATCACTTGCATGGGAGGAAGAAAAGTATGAAGGGCCGTTCACCGCTTCCGTGGTCTGTGAGGTATAAAGTTGCAATTGGGATTGCAGAAGCTGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTGCTTTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGACTAGCTTCATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTGAAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTGGGAGTTGTTTTGTTGGAACTCTTAACAGGCCGCAAGCCAATTGAAGCAAAAAGAACTCCTGGAGAGGAAAATTTGGTCTTATGGGCTAAACCTTTGCTGAGAAAAGGGAGAGGAGCCATTGAAGAGTTGCTTGATCCTCAAGTCAAGTACAGTTTGAGATACACAGATCAAATGGCTAATATGGTTGATGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTAGGAGGCCTAGCATAGGTGAGATTGTTGCAATACTGAAAGGTGAAGTAGAGCCTGTTTTCTCTAGAAGAAGGAAGTCTGGTTATTTTGGTAATGGATATGTGATTGATTATTACCCTCAATTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTCCAGAGTGTGAGGATGATGATTTTCTTTGTGGTCGTTGA 1545 0.4207 MSFCSSQGICSDDTKDASNAHVSSVVGNDFSDHKRLKLGTFLRKTMWDFAWACVGVPCGGSNDLNGLRKTTLEHNKAWLLAESGAELASADPQSVHSSFRFSFCSQVEVESFNTSYSASAAAAAATVLMVNLEYESQVRELKWKRVQSLEKSISPVVNTLIRFSYDEIVSATRNFSKGRVLGRGALSCVFRGRVGLWRTAVAIKRLDKEDKECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGNLEHHLHGRKKSMKGRSPLPWSVRYKVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELLTGRKPIEAKRTPGEENLVLWAKPLLRKGRGAIEELLDPQVKYSLRYTDQMANMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVFSRRRKSGYFGNGYVIDYYPQLQQTNNEMKSHLALAMLGVPECEDDDFLCGR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2898 514 Gene3D Transferase(Phosphotransferase) domain 1 253 466 - -
Ssu6g2898 514 Pfam Protein kinase domain 176 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2898 514 Gene3D Phosphorylase Kinase; domain 1 160 252 - -
Ssu6g2898 514 SUPERFAMILY Protein kinase-like (PK-like) 154 456 IPR011009 -
Ssu6g2898 514 ProSiteProfiles Protein kinase domain profile. 175 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2898 514 SMART serkin_6 175 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2898 514 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 13 512 - -
Ssu6g2898 514 PANTHER OS01G0750732 PROTEIN 13 512 - -
Ssu6g2898 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2898 Ssu-Chr6 66992595 66995160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2898 163 458 Trihelix Transcription Factor Family AT1G70460 41.611 6.52e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu6g2898 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2898 - - gmx:100820245 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1459 9 49844867 49847845 Ssu6g2898 6 66992595 66995160 PCT