Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2891 ATGAAGAGGGAAAGGGTGGAAGACGCGAGCGCAGTGAAAGGTGAATGCTCTGGTACTGGGAAGGGGAAGATGTTTGAGGAAGAAGAACACGAAGACAAGTTGCTGGCGGGTGTAGGATACAAAGTGTGTTCCTCAGACATGGCTGACGTGGCACAGAAGCTGGAGCAATTGGAGATGGTGATGGAGGAAGATGGAATTCCCTATCTCGCCACCGACACCGTGCACTACGACCCAACCGATCTCCACGGTTGGGTCAAGAACATTCTCACCGAAATCAACAATAACAACGACGCACCCAATCACACCACCAGCAACGCTCTCGTTCCGTCGCCGTTAATTGCCGATTCCGAGAACGATCTCGGAGCGATTCCATTACCATACATCGAAGCGTGTCCACAAAcagaaaatcaaaatcaaaaccgCTACAAGCGTTTCAAGagttcttcttccttttcttcgtCTTCTCCGTTGTCGCCGGCGATTTCATCGGAAAACACGCTTCCGGTGGTTCTGGTGGAGGAAGCCGGCGTGCACCTCGTCCATGCTCTCATGGCTTGCGCGGAGGCGGTTCAGTTTGGAAACGCGAGCCTCGCGGAGGCTCTCTTGAAGCACGCGGGAACCCTCGCGGCGTCGCAAGGAGGTTCCATGGGCAAGGTTGCGTCGTTCTTCGCTCAAGCACTCGCTCGAAGAATCTACGGTTTCTACCCGCAGGAAACCCTAGATTCTTCCTACTCCGACATGCTTCACATGCATTTCTACGAATCGAGCCCGTACCTGAAATTTGCGCACTTCACCGCGAACCAAACCATCCTAGAAGCCTCCGCCGCCGCGGAAACGGTTCACGTCGTCGATTTCGGCCTCAGGCAGGGGTTGCAGTGGCCGGCGCTGATGCAAGCCCTCGCGGTCCGTCCGGGTGGTCCGCCGGCGTTCCGCCTCACCGGAATCGGACCGCCGCGCCTCGACGACGCCGATTCCGACGCGCTGAGTCAGGTCGGTTTGAAACTCGCGGAACTCGCTCGAACAATTAAGATTCAATTCGAGTTCCGCGGATTCGTGTGCAACAGCTTGGCGGATCTGGATCCTACCGCGCTCGAGATCCGACCCGAAGAGTTTGTCGCTGTTAACTCTATCTTCGAGCTTCACCGGTTACTGGCGCGACCTGGTGAGATTGGAAAGGTGTTAGCCACAATTAAGAGGATAAAACCGGAGATTGTGACCGTGGTGGAGCAAGAAGCCAACCACAACGGTCCGGTATTTCGGGACCGGTTCACGGAGGCTTTGTACTATTACTCGAGTTTGTTTGACTCGCTGGAGGGGTCGGTGGCGGCGCCGAGTGAGGAGGCGTTGGCGATGTCGGAGTTGTACCTGGGGAGGCAGATATGTAATGTGGTGGCGTGTGAGGGGGAGGAGCGCGTAGAGAGGCACGAGACGCTGGGTCAGTGGAGAGGGAGGTTCGGTTCAGCCGGGTTCGAACCGGTTCGGTTGGGTTCGAACGCGTTCAGACAAGCGAGGATGTTGCTGGGGCTGTTCGCTGACGGGGAAGGGTATAGGGTGGAAGAGAACAATGGGTGCCTCATGCTTGGGTGGCACACGAGGCCACTTGTTGCCACCTCAGCGTGGAGACTCGCGGTGAGTTTGACTCACTGGGTCTGA 1653 0.5547 MKRERVEDASAVKGECSGTGKGKMFEEEEHEDKLLAGVGYKVCSSDMADVAQKLEQLEMVMEEDGIPYLATDTVHYDPTDLHGWVKNILTEINNNNDAPNHTTSNALVPSPLIADSENDLGAIPLPYIEACPQTENQNQNRYKRFKSSSSFSSSSPLSPAISSENTLPVVLVEEAGVHLVHALMACAEAVQFGNASLAEALLKHAGTLAASQGGSMGKVASFFAQALARRIYGFYPQETLDSSYSDMLHMHFYESSPYLKFAHFTANQTILEASAAAETVHVVDFGLRQGLQWPALMQALAVRPGGPPAFRLTGIGPPRLDDADSDALSQVGLKLAELARTIKIQFEFRGFVCNSLADLDPTALEIRPEEFVAVNSIFELHRLLARPGEIGKVLATIKRIKPEIVTVVEQEANHNGPVFRDRFTEALYYYSSLFDSLEGSVAAPSEEALAMSELYLGRQICNVVACEGEERVERHETLGQWRGRFGSAGFEPVRLGSNAFRQARMLLGLFADGEGYRVEENNGCLMLGWHTRPLVATSAWRLAVSLTHWV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2891 550 Gene3D - 30 92 IPR038088 -
Ssu6g2891 550 SMART DELLA_2 32 102 - -
Ssu6g2891 550 PANTHER DELLA PROTEIN RGL1 27 541 IPR030006 GO:0003712|GO:0005634
Ssu6g2891 550 ProSiteProfiles GRAS family profile. 170 541 IPR005202 -
Ssu6g2891 550 Pfam GRAS domain family 179 541 IPR005202 -
Ssu6g2891 550 Pfam Transcriptional regulator DELLA protein N terminal 32 96 IPR021914 -
Ssu6g2891 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2891 Ssu-Chr6 66877975 66879627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2891 21 545 GRAS Transcription Factor Family AT2G01570 57.018 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g2891 GRAS 1.3e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2891 K14494 - gmx:100799695 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1452 9 49761049 49762785 Ssu6g2891 6 66877975 66879627 PCT