Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2868 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCCACTTCATCCTCACCAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGCTAGCAGGACTATTAAGGTGTGGGAAGAGTTGCAGGCTCAGGTGGACAAACTACCTTAGGCCAGACTTAAAGAGAGGCCTTCTATCAGAATACGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATTAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCGGTCACCCATAAACCACTCCCTAATGCCACTGAACAAACCCAAAATCAACCCAATCAACAACAACTACACCAACCAGTAGAAGAAAAGCAGAACCAACAAGCTTTGCAAGTTGACTTTGACCCCAAAGTTCACCAGAATAAGGAGCCAGAGAAGCCAGAAACTTCATTGGAGTCATCAATCATCAATGAAGCCAAAGAGGAAGACCAAATTGTAATGCCCCCATTTGACACAATGGAACTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCTGATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCTCTACATCTTACTCAAATTCAACCAATTTCCTTGAAGACCTACAGCTACAGGATTTTGAATGGTCTTGTAATTACAAtgataatatcattattaacaataacaacaatgaagacaacaacaacaaccataataGCAGTATGGCCTTGTGGGATGATGACTATATTAGCACCCTTAATTGGCTGATTAATGAAGATGATGATAGTGACGGAAACCAAGTGTTTGATGCTTCTCTCACTCAGTTCTCAAGAATGGTCATGGATTCAGAATCTTGGGCATATGGGttgttttga 984 0.3994 MGRQPCCDKVGLKKGPWTAEEDKKLIHFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTQNQPNQQQLHQPVEEKQNQQALQVDFDPKVHQNKEPEKPETSLESSIINEAKEEDQIVMPPFDTMELMNGFCTDEVPIIEPDEILMPCAPSSSSTSTSYSNSTNFLEDLQLQDFEWSCNYNDNIIINNNNNEDNNNNHNSSMALWDDDYISTLNWLINEDDDSDGNQVFDASLTQFSRMVMDSESWAYGLF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2868 327 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 301 - -
Ssu6g2868 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu6g2868 327 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Ssu6g2868 327 CDD SANT 16 61 IPR001005 -
Ssu6g2868 327 Gene3D - 11 67 - -
Ssu6g2868 327 SMART sant 13 63 IPR001005 -
Ssu6g2868 327 SMART sant 66 114 IPR001005 -
Ssu6g2868 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu6g2868 327 Gene3D - 70 160 - -
Ssu6g2868 327 PANTHER MYB TRANSCRIPTION FACTOR 1 301 - -
Ssu6g2868 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu6g2868 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu6g2868 327 MobiDBLite consensus disorder prediction 122 187 - -
Ssu6g2868 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu6g2868 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu6g2868 327 CDD SANT 74 112 IPR001005 -
Ssu6g2868 327 MobiDBLite consensus disorder prediction 129 162 - -
Ssu6g2868 327 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2868 Ssu-Chr6 66519454 66521662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2868 1 327 MYB Transcription Factor Family AT5G16600 47.619 1.20e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g2868 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2868 K09422 - gmx:100792103 528.094