Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2866 ATGAAGTCCGCGCGGGTCAAAGAAGCGATTCTGTTCACTCTCGCGGCGTGCGCGTTCGCCATTGCGGGTTCGGATCTAGCCTCGGACAGAGCGGGACTATTGTCACTCCGAAGCGCGGTGGGGGGGCGCACGCTGTTATGGAACGCGACGCAAACGAGCCCTTGTTTGTGGACTGGCGTGCGCTGCACCAACGGGAGAGTAACCTTGCTGCGCCTCCCCGCGATGGGCCTCTCCGGTTCGCTCCCCTCCGGTTTGGGAAACCTCACCGAACTGCAGACGCTTTCCCTCCGGTTCAACGCGCTGACCGGACGAATCCCCGCGGATTTCGCGGAGCTGAAAGCGCTGCGCAACCTCTACTTGCAGGGAAACTTCTTCTCCGGTGAAATTCCCGGTTCGGTGTTCGCGCTGCAGAACCTGGTGAGGCTGAATCTGGGCAACAACAATTTCAGCGGCGAGATTTCGCCGCGGTTCAATGGCCTCACTCGTTTGGCCACTCTCTATCTCGAACGCAACAATTTCACGGGCTCAATCCCCGACCTCAGTGTTCCGCCTCTGGATCAGTTTAACGTGTCGTTTAATTCCCTAACAGGGCCCATTCCGGGGAGATTTTCGCGTCTGGACCAGAGCGCGTTTGTCGGAAACTCCCTCTGCGGGAAGCCCCTGCAACTCTGCGCCGGAACCGAggagaaaaatagtaaattatccGGAGGTGCCATTGCGGGCATTGTGATTGGTTCTTTGTTAGGTGTGTTGTTGATTCTGCTCCTTCTGTTTTTGTTACGTAGAAAAAGGAGTGAGAAAAGCGATGAAAAGAAGCGTGTTGTGGAAGGTGAAGTTTCTCGTGAAAAGAGTACCGAGGGCGGTGGTGGCGGGAATTCGGGTTCGGTGGAGAGGAGTGAGGTTAGGAGCGGTGGTGGTGGAGATAAGAGTTTGGTGTTTTTTGGGAGTGTGAATAGGGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCGGCTGAAGTGTTGGGGAAAGGGACGTTTGGAACTACTTATAAGGCGACTTTGGAGATGGGGGCGAGTGTGGCGGTGAAGAGGTTGAAGGATGTTACTGCAACAGAGAGGGAATTCAGGGAGAGGATTGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTCAGGGGTTATTGTTTTAGCAGGGATGAGAAGCTTGTTGTGTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTACATGcaAACGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCTGCCCGTGGGATTGCATACATTCATTCTCATGGACCAACATCCTCCCATGGAAACATCAAGTCATCGAATATCCTTCTCACCAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTCCCAACCTCTACGCCAAACCGTGTTTCTGGTTACCGTGCCCCAGAGGTCACTGACGCGCTCAAAGTATCCCCAAAAGCAGATGTCTATAGTTTTGGTATCATGCTTTTGGAGCTGCTTACAGGGAAGGCTCCTACTCATTCTTCACTGAATGAAGACGGGGTGGACCTCCCAAGATGGGTCCAATCTGTGGTTCAAGATGAGTGGAACACTGATGTATTTGACATGGAGCTTCTAAGGTACCAGAATGTTGAGGAGGAAATGGTCAAGCTCTTGCAGCTTGCTCTTGAATGTACTGCTCAACATCCTGACCAGAGACCTCCAATGGATGTGGTGGCAAGCAAGATTGAGGAAATTTGTTATCCTAGTTCAGAGAAAGAGGAAGGGAAGAATCATGATTTTAAAGATGGTGATAATGGATTTTCCCAACACTACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1902 0.5126 MKSARVKEAILFTLAACAFAIAGSDLASDRAGLLSLRSAVGGRTLLWNATQTSPCLWTGVRCTNGRVTLLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGRIPADFAELKALRNLYLQGNFFSGEIPGSVFALQNLVRLNLGNNNFSGEISPRFNGLTRLATLYLERNNFTGSIPDLSVPPLDQFNVSFNSLTGPIPGRFSRLDQSAFVGNSLCGKPLQLCAGTEEKNSKLSGGAIAGIVIGSLLGVLLILLLLFLLRRKRSEKSDEKKRVVEGEVSREKSTEGGGGGNSGSVERSEVRSGGGGDKSLVFFGSVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGASVAVKRLKDVTATEREFRERIEQVGKMVHHNLVPLRGYCFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGPTSSHGNIKSSNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEVTDALKVSPKADVYSFGIMLLELLTGKAPTHSSLNEDGVDLPRWVQSVVQDEWNTDVFDMELLRYQNVEEEMVKLLQLALECTAQHPDQRPPMDVVASKIEEICYPSSEKEEGKNHDFKDGDNGFSQHYYSVDSGVSQA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2866 633 SUPERFAMILY Protein kinase-like (PK-like) 332 592 IPR011009 -
Ssu6g2866 633 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Ssu6g2866 633 Pfam Protein tyrosine and serine/threonine kinase 332 592 IPR001245 GO:0004672|GO:0006468
Ssu6g2866 633 ProSiteProfiles Protein kinase domain profile. 328 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2866 633 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Ssu6g2866 633 Gene3D Phosphorylase Kinase; domain 1 307 402 - -
Ssu6g2866 633 SUPERFAMILY L domain-like 47 208 - -
Ssu6g2866 633 PANTHER OS05G0588300 PROTEIN 14 601 - -
Ssu6g2866 633 MobiDBLite consensus disorder prediction 600 633 - -
Ssu6g2866 633 Gene3D Transferase(Phosphotransferase) domain 1 403 620 - -
Ssu6g2866 633 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Ssu6g2866 633 MobiDBLite consensus disorder prediction 270 305 - -
Ssu6g2866 633 MobiDBLite consensus disorder prediction 600 617 - -
Ssu6g2866 633 CDD STKc_IRAK 334 597 - -
Ssu6g2866 633 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Ssu6g2866 633 PANTHER INACTIVE RECEPTOR KINASE-RELATED 14 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2866 Ssu-Chr6 66466421 66469178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2866 25 597 Receptor kinase-like Gene Family AT1G48480 57.398 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g2866 PK_Tyr_Ser-Thr 4.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2866 - - gmx:100801103 1001.5