Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2853 ATGACGGGGAAAAAGAAGGCGATGAATGCGGCGACGGGGGAAGAGGGAGAGGAGGGGAAGCAAACGACGTCGTCTTCGAgatctctttcttctttgtcttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcttCTTCGGATGAGAGAGAGTACGAGGTGCAGGACCTGCGGGACCGGTTGAAATCGTCGAGGGGGAGCCGGTTCGATCTGATAGAGAACGAGTTGGGACTCAACTCGACTTGGAGCAAGTTCAGTCGCCAAGCCCTTCTCCATGGAATCCGAGGCTTCTCCAAGGACTTCGTTAAAGACTTCGTTATCCATCCCGATAACAGGTGGTATCGGGCATGgacaaaattcatattattatggGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGTTTTTTCCGTGGCTTGCCTGAGAATCTCTTTATACTGGATATCATTGGACAAATAGCTTTTCTCGTGGATATTGTCTTGCAATTCTTTGTTGCTTATAGAGATAGTCAGACCTATCGTATGGTCTACAAGCGAACCCCTATTGCTCTGCggtatCTAAAATCTGACTTTATATTTGATCTTCTTGGATGTATGCCCTGGGACATCATCTACAAGGCTTGTGGACGAAAAGAGGAAGTGAGGTACCTTTTGTGGATCAGATTATATCGGGTGCGGAAAGTCACAGATTTTTTCCATAAGTTGGAGAAGGACATACGTGTCAATTACATTATTACCCGGATTGTGAAACTGATAGTAGTTGAACTCTATTGCACCCATACAGCAGCCtgcattttttactatttggcTACTACACTACCGGAATCCCAAGAAGGGTACACTTGGATAGGAAGTTTACAACTGGGTGACTTTAGTTATTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCTCTGTATTTCGCTATTGTTACGATGGCTACAGTTGGCTATGGAGATATACATGCAATAAATATGAGGGAGATGATATTCATAATGATATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGactgaaaagtttagggacaAGATGACAGACCTTATGAAATATATGAACAGAAATAGGCTTGGAAGGGATATTCGTGAACAAATAAAAGGCCATGTGCGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAgATATCCCAAACATTATATTTGCCATACATTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTGCTGGAGGAAGTAGGCACAGCAGAAGACGGATCTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATACCTCAGCCATATACTGTCCGCATTTGTGAACTGAGTAGACTCCTGCGACTCGATAAACAATCATTTACAAATATCCTAGACATATACTTTTATGATGGGAGGAAAGTATTAAACAACCTTCTAGAGggaAAAGAGTCTTTTCGAGGTAAGCAGTTGGAGACAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTTTTCATGGGGATCTGTATCAGCTAAAAGGTTTAATTCGAGCTGGAGCTGACCCCAACAAGACAGACTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACTCTTTTCCTTATTCAAGAAGGTGTAGATGTCAATATTAAAGaTAACTTCGGGAACACACCCTTACTTGAAGCAGTTAAGTGTGGACATGATCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCTATGAAGATTGAAAATGCTGGTGGTTTTTTGTGTACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTTCCGAAGCCCTCTTCACATTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGTTATTAGAAGCCGGATCTAGTGTTTTTACCAAAGACAGATGGGGAAATACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGAAGCAAAATCTGCTCAATTGTCAGAATTCCCATATCCCTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACGGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTATTATGGGTTCCACACTCCATCGAAGAGCTAATCAAAACAGCGGCAGAGCAAATAGAATTTTCTGGCGATTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGACGTGGACATGATTAAGGATGGTCAGAAGCTGTATCTAGTCCATGAAACACATTAG 2580 0.3957 MTGKKKAMNAATGEEGEEGKQTTSSSRSLSSLSSSSSSSSSSSSSSDEREYEVQDLRDRLKSSRGSRFDLIENELGLNSTWSKFSRQALLHGIRGFSKDFVKDFVIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSDFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVTDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLQLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAINMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVVMEQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSLLQPNSSFGEISILCNIPQPYTVRICELSRLLRLDKQSFTNILDIYFYDGRKVLNNLLEGKESFRGKQLETDITFHIGKQEAELALKVNSAAFHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIKDNFGNTPLLEAVKCGHDRVASLLVREGASMKIENAGGFLCTAVARGDSDYLKRLLSNGMDPNLKDYDFRSPLHIAAAEGLYFMAKLLLEAGSSVFTKDRWGNTPLDEARMCGNKNLIKLLEEAKSAQLSEFPYPSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWVPHSIEELIKTAAEQIEFSGDSCILSEDAGKITDVDMIKDGQKLYLVHETH 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2853 859 PRINTS EAG/ELK/ERG potassium channel family signature 306 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g2853 859 PRINTS EAG/ELK/ERG potassium channel family signature 149 159 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g2853 859 PRINTS EAG/ELK/ERG potassium channel family signature 258 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g2853 859 PRINTS EAG/ELK/ERG potassium channel family signature 350 359 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g2853 859 ProSiteProfiles KHA domain profile. 786 859 IPR021789 -
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat region circular profile. 707 739 - -
Ssu6g2853 859 MobiDBLite consensus disorder prediction 1 51 - -
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Ssu6g2853 859 CDD CAP_ED 434 548 IPR000595 -
Ssu6g2853 859 Gene3D - 115 360 - -
Ssu6g2853 859 Pfam Cyclic nucleotide-binding domain 454 538 IPR000595 -
Ssu6g2853 859 Gene3D Helix hairpin bin 361 417 - -
Ssu6g2853 859 Gene3D - 567 675 IPR036770 -
Ssu6g2853 859 PRINTS Ankyrin repeat signature 690 704 IPR002110 GO:0005515
Ssu6g2853 859 PRINTS Ankyrin repeat signature 611 626 IPR002110 GO:0005515
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat profile. 643 675 IPR002110 GO:0005515
Ssu6g2853 859 MobiDBLite consensus disorder prediction 16 47 - -
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat region circular profile. 643 674 - -
Ssu6g2853 859 Pfam Ion transport protein 114 359 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu6g2853 859 SUPERFAMILY Ankyrin repeat 583 762 IPR036770 -
Ssu6g2853 859 SUPERFAMILY cAMP-binding domain-like 362 551 IPR018490 -
Ssu6g2853 859 Gene3D - 676 775 IPR036770 -
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat region circular profile. 610 642 - -
Ssu6g2853 859 Pfam Ankyrin repeats (3 copies) 585 673 IPR002110 GO:0005515
Ssu6g2853 859 Pfam Ankyrin repeats (3 copies) 680 761 IPR002110 GO:0005515
Ssu6g2853 859 SMART ANK_2a 674 703 IPR002110 GO:0005515
Ssu6g2853 859 SMART ANK_2a 610 639 IPR002110 GO:0005515
Ssu6g2853 859 SMART ANK_2a 707 736 IPR002110 GO:0005515
Ssu6g2853 859 SMART ANK_2a 643 672 IPR002110 GO:0005515
Ssu6g2853 859 SMART ANK_2a 740 770 IPR002110 GO:0005515
Ssu6g2853 859 Gene3D Jelly Rolls 418 555 IPR014710 -
Ssu6g2853 859 ProSiteProfiles cAMP/cGMP binding motif profile. 434 554 IPR000595 -
Ssu6g2853 859 Pfam KHA, dimerisation domain of potassium ion channel 785 854 IPR021789 -
Ssu6g2853 859 PANTHER POTASSIUM CHANNEL AKT1 43 858 IPR045319 GO:0005249|GO:0006813
Ssu6g2853 859 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Ssu6g2853 859 SUPERFAMILY Voltage-gated potassium channels 107 359 - -
Ssu6g2853 859 SMART cnmp_10 434 552 IPR000595 -
Ssu6g2853 859 PANTHER POTASSIUM CHANNEL SKOR-LIKE 43 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2853 Ssu-Chr6 66224107 66235582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2853 681 770 Ion Channels AT5G37500 34.513 1.38e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2853 K21867 - gmx:100814385 1587.39