Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2851 ATGTGCGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATCAGGATATCCCTATTCTATTCGAGCTAAgATATCCCAAACATTATATTTGCCATACATTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGTTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTGCTGGAGGAAGTAGGCACAGCAGAAGACGGATCTGAAGAAACTGTTTCACTTCTGCAGCCTAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATACCTCAGCCATATACTCTAAAAGGTTTAATTCGAGCTGGAGCTGACCCCAACAAGACAGACTATGATGGAAGGTCACCTTTGCATCTTGCAGCATCTAGAGGATATGAAGATATCACTCTTTTCCTTATTCAAGAAGGTGTAGATGTCAATATTAAAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTTCCGAAGCCCTCTTCACATTGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGTTATTAGAAGCCGGATCTAGTGTTTTTACCAAAGACAGATGGGGAAATACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGAAGCAAAATCTGCTCAATTGTCAGAATTCCCATATCCCTCCCAAGAATTTACAGATAAAATGCACCAAAGAAGTGCACGGTGTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTATTATGGTTCCACACTCCATCGAAGAGCTAATCAAAACAGCGGCAGAGCAAATAGAATTTCTGGCGATTCTTGTATTTTATCAGAAGATGCTGGTAAAATTACTGACGTGGACATGATTAAGGATGGTCAGAAGCTGTATCTAGTCCATGAAACACATTAG 1038 0.3979 MCAYSMRVATLRLLSSGYPYSIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEFFLPGEVVMEQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSLLQPNSSFGEISILCNIPQPYTLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIKAVARGDSDYLKRLLSNGMDPNLKDYDFRSPLHIAAAEGLYFMAKLLLEAGSSVFTKDRWGNTPLDEARMCGNKNLIKLLEEAKSAQLSEFPYPSQEFTDKMHQRSARCSLSTRGIRKIIEDMELYYGSTLHRRANQNSGRANRISGDSCILSEDAGKITDVDMIKDGQKLYLVHETH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2851 345 CDD CAP_ED 40 121 IPR000595 -
Ssu6g2851 345 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Ssu6g2851 345 PRINTS Ankyrin repeat signature 177 191 IPR002110 GO:0005515
Ssu6g2851 345 PRINTS Ankyrin repeat signature 139 154 IPR002110 GO:0005515
Ssu6g2851 345 Pfam Ankyrin repeats (3 copies) 169 248 IPR002110 GO:0005515
Ssu6g2851 345 Gene3D - 169 272 IPR036770 -
Ssu6g2851 345 Gene3D - 123 168 IPR036770 -
Ssu6g2851 345 SMART ANK_2a 227 257 IPR002110 GO:0005515
Ssu6g2851 345 SMART ANK_2a 194 223 IPR002110 GO:0005515
Ssu6g2851 345 SMART ANK_2a 138 167 IPR002110 GO:0005515
Ssu6g2851 345 Gene3D Jelly Rolls 11 122 IPR014710 -
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL AKT1 19 122 IPR045319 GO:0005249|GO:0006813
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL SKOR 168 344 - -
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL SKOR 19 122 - -
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL SKOR 120 168 - -
Ssu6g2851 345 ProSiteProfiles Ankyrin repeat region circular profile. 194 226 - -
Ssu6g2851 345 ProSiteProfiles cAMP/cGMP binding motif profile. 40 122 IPR000595 -
Ssu6g2851 345 SUPERFAMILY cAMP-binding domain-like 14 123 IPR018490 -
Ssu6g2851 345 Pfam Ankyrin repeats (many copies) 125 159 IPR002110 GO:0005515
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL AKT1 168 344 IPR045319 GO:0005249|GO:0006813
Ssu6g2851 345 PANTHER POTASSIUM CHANNEL AKT1 120 168 IPR045319 GO:0005249|GO:0006813
Ssu6g2851 345 SMART cnmp_10 40 158 IPR000595 -
Ssu6g2851 345 ProSiteProfiles Ankyrin repeat region circular profile. 138 168 - -
Ssu6g2851 345 Pfam KHA, dimerisation domain of potassium ion channel 314 340 IPR021789 -
Ssu6g2851 345 SUPERFAMILY Ankyrin repeat 121 250 IPR036770 -
Ssu6g2851 345 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Ssu6g2851 345 Pfam Cyclic nucleotide-binding domain 60 122 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2851 Ssu-Chr6 66192295 66196879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2851 19 199 Ion Channels AT3G02850 55.882 1.07e-61 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2851 K21867 - cann:107873031 304.679