Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2850 ATGAGAACAATGTCCTTCGCTCTCATCGAGGCCTGCAAGAAGCGAAAACGGTGGCCCAAGTTTTTCAGGTTCAACTCGTTCGCCGACCCCATTGCACCCTTGGGTTCGTTCCGCGAAAACGTTCGGGTTTTCCTCCAAGAAGCTGGGGAACTCGAAGATTATAACGTGTCGGGGAATCCCCTTTGGTGCACCCTTCTCATACACGACAAGTCCAACGTCATGGCTCCCCTTTACACCGTCGAAGAACACGTGTACCACTCTTCACACCCCTTCTGCGATCACTGCCGCTGCGTGGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCACTTTATAATCCCGATGGACAATGGGTGGCATAAACCCTTAGATGAAGATGCTATAGACAATCAGGGTCACCTCTTGCATGGGGTGATTCATTGCAACGGGTATGGCCATTTGCTATGTGTCAATGGCATTGAAGGAGGGTCCAAGGTTCTCACAGGGAGAGAGATCATGGATCTCTGGGACCGAATATGTACCAATCTCCGAGCAAGGAAAATTGCAGTGGAAGATGTTTCATGTAAGAGGTCTATGGATCTACGCTTACTTCATGGAGTTGCTTATGGTCACTCATGGTTTGGTAGGTGGGGTTACAGATTTTGCCGTGGAAGCTTTGGTGTGACAGAACAAGATTACAATGGAGCAATGACAATGCTTGGTTCTTTGGAGCTTGACATGATTGTAAAAGATTTGAGTAAGACAAAGTACCACAAAGAAATCGAACAAATGATTCGGTGCTACAGAGATATGAGTGAGACTCATATTATTTCACTCAGGGACCTTCTCAGGTTTATGCTTATCGTCAAGTCTTCTCGTGCTCCTGTGTCTAAGATAACAGTCACTTATTCTGCTGCTGctgattcttcttcttctgcacTCATCTCAAGAAATTCAACCAAACACACGCTTCCAAACAGACCAAATCCCATGAAGGAGAAATCTGTGAGGTATAAGAAGTTCAGCAGTGCAGTGACCAACATGGATAGCAGGTGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTTGATGCACTGAAAGAGAACAAGGCTGTGAAACCAGGCTCAGGTGGGATGGCCAGGCAAGATGTGAGAGATGCAGCTAGGCTGCACATTGGTGACACAGGCTTACTTGATTATGTACTTAAATCACTTAACAATGTGATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATCCTAGAGTACACTATTCATGATCTTGGCAAGGGGTACAAAGCCCCTGAACTGGAGCCTGAGGTGATGGCTCATGTAGATCAACAAGTAGAGCCATCTTGGGTGCCTGGTAATGATGTTTACTGTGATGTATTGTTTCTGTACAAGAATGTGCTATTGGGTTACCCAGATTCAGAAGCAGTGGACTTGGCAGTTCAGACTATTCTAGACAGCAGGTACTTTGTGAAGGAGTGGCCAGTGAGGGATGAAATGGAGCAGCAGGTATTGACATTCATTTGCCACCTGCAACCAAATTTTGTGGAAATGAAATATGAGTTGAAAGGGCTACCATGTGGAGAGGTTGTAGTGGTTCCACTGCATGCAACTGTTGGGGACTTGAAGAGAGCTGCTGAGGCTGCTCTGAGGGACACTTACTGTATTGCAGAAAGGCTTATAGTGACAGACATTAAAGAACTTATGGGAGTGAGTGATGAGGAAGTGTTGTTTGGACTAATCCAGTCTGGTGTGGAACTTTGTGTGAGGGGAATTGCTATAGATTTGTGCACCCCATTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTGAGATGTGAGTGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAGCATACTAGATGCTGTGGCATAGAAGATTCTGAGACAGTGCCACCACTGTTTGTGTGCACTGGTTGCTGTGATTCACTTGTACCCTCCAGGATTGAATCAGCCTTTGGTGTGGATTCTGCTGATTCTTTTCTGGTTTCAGCAGACCCTACCCTTTTTCTAGAATATGAGTATAGATTTTAA 2097 0.453 MRTMSFALIEACKKRKRWPKFFRFNSFADPIAPLGSFRENVRVFLQEAGELEDYNVSGNPLWCTLLIHDKSNVMAPLYTVEEHVYHSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLDEDAIDNQGHLLHGVIHCNGYGHLLCVNGIEGGSKVLTGREIMDLWDRICTNLRARKIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEQDYNGAMTMLGSLELDMIVKDLSKTKYHKEIEQMIRCYRDMSETHIISLRDLLRFMLIVKSSRAPVSKITVTYSAAADSSSSALISRNSTKHTLPNRPNPMKEKSVRYKKFSSAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGSGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGYKAPELEPEVMAHVDQQVEPSWVPGNDVYCDVLFLYKNVLLGYPDSEAVDLAVQTILDSRYFVKEWPVRDEMEQQVLTFICHLQPNFVEMKYELKGLPCGEVVVVPLHATVGDLKRAAEAALRDTYCIAERLIVTDIKELMGVSDEEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCTGCCDSLVPSRIESAFGVDSADSFLVSADPTLFLEYEYRF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2850 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 666 IPR013083 -
Ssu6g2850 698 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 669 - -
Ssu6g2850 698 SUPERFAMILY FYVE/PHD zinc finger 609 666 IPR011011 -
Ssu6g2850 698 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 669 - -
Ssu6g2850 698 SMART PHD_3 616 662 IPR001965 -
Ssu6g2850 698 ProSitePatterns Zinc finger PHD-type signature. 617 661 IPR019786 -
Ssu6g2850 698 CDD PHD_MMD1_like 617 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2850 Ssu-Chr6 66180170 66183375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2850 13 667 PHD Transcription Factor Family AT5G22260 33.522 5.42e-118 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2850 - - gmx:100797388 1238.79