Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2849 ATGGCGAAGGAAAATACTGAAAGCGACAAAGTGAACTTGAACACATTGGATGAACAAGTGGCGCAACGTAAAATTCACAAGCCAAGGTGGCTTGAGGCTTTTCTGAGGAAAACATTTTTTGACTCATGTACAACTCATCCATTTCGTAGGAATGAGTTAAATAAGTATTGTATAAATTGCAATCTGTCAGCTTGCCAATATTGTGTATCATCTGGTCCTCATCGCCACCACAAGATACTTAAAATCTATAGACATGTTTATAAGGATGTTGTCTCCCTTGCAGCTATGGAAAAGTACATTGATAGCTCACAAATTCAGCCTTACAAATGCAACAAGCGACTAGTTATTTCTCTGAATCCTCTCCCACATTGTGGTTCAGCAATAAATAATGAGGCATCATGCAATACCTGCAATAGAAAATTGACTGAACCTGATTTATATCGCTATTGCTCTATTTCTTGCAAGGTGGCAGCTGTTTTAAGTAAGTCTGATGATTCAATTCCTCCTTTCATTTCCATCCAGACtcgtcctcctcctcctcctcctcctcaggAAAAGCTGAAGGAAACTTCTGAATCCCAAAAGCcactaaagaggaaaagaaagggaATACCCCACAGAGCTCCCTTCTTCTAA 636 0.3553 MAKENTESDKVNLNTLDEQVAQRKIHKPRWLEAFLRKTFFDSCTTHPFRRNELNKYCINCNLSACQYCVSSGPHRHHKILKIYRHVYKDVVSLAAMEKYIDSSQIQPYKCNKRLVISLNPLPHCGSAINNEASCNTCNRKLTEPDLYRYCSISCKVAAVLSKSDDSIPPFISIQTRPPPPPPPQEKLKETSESQKPLKRKRKGIPHRAPFF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2849 211 CDD Bbox2 43 82 - -
Ssu6g2849 211 Gene3D Classic Zinc Finger 36 111 - -
Ssu6g2849 211 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 211 - -
Ssu6g2849 211 MobiDBLite consensus disorder prediction 172 186 - -
Ssu6g2849 211 Pfam PLATZ transcription factor 84 156 IPR006734 -
Ssu6g2849 211 SUPERFAMILY B-box zinc-binding domain 42 84 - -
Ssu6g2849 211 MobiDBLite consensus disorder prediction 169 211 - -
Ssu6g2849 211 ProSiteProfiles Zinc finger B-box type profile. 43 82 IPR000315 GO:0008270
Ssu6g2849 211 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2849 Ssu-Chr6 66176997 66179411 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu6g2849 PLATZ 5.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2849 - - tcc:18601328 267.314