Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2846 ATGGTTTTGTCATGGACAAGAGGGAGAGTGTTCCGGCGTGCCCGGAAAGGGAAAGAGTTGAATTCCGGTGGCGATCTGGAGATAGAGATTGCGATTCCCACCCACTTCCGGTGCCCGGTAACGTTGGACATGATGAAAGACCCTGTGACGGTGTCCACGGGGATTACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACCAAAACGGAGTTGACCAGCGTTGACATGATCCCGAACCACGCCATTCGTAGGATGATTCAGGATTGGTGCGTGGAACACCGTTCCCACGGGATCGAACGGATCCCCACTCCTCGGATCCCGGTAACTCCGTACGAGGTAACTGACGCGTGTACGAGGATCCTGTCGGCGGCTCAGCACGGGGACGAGAACAAGTGTGTGGAACTCGTGAGGAAGATCAAGGCGTGGGGGAAGGAAAGTGAGAGGAACAAGAGGTGCATAGTGGCCAACGGTGCTGCTCTTGCAATGGCCAATGCATTTGATTGTTTCTCACGTGGGGTGGTTGAGGAGAACGTGGTTGTTTTGGATGAGATTTTGGGGGCTTTGACTTGGATGCGTCCTCTCCCTGATGAGGGTAGATCCGTGTTGGGGTCAGCGAGCTCTATTGGTTGCATGGTTTGGTTCTTGAATGGTAAACAATTGTCTACGAGGCAGAATGCTGCTTTGTTGCTTAAGGAAATGCGTGTTGAGGCGTTGCTGAAAAGTGTGGGAGTTTTTGAAGCTTTGGTTAACATGATTAAGGAGCCTGTTGGGCCTGCTTCTACCAAGGCATGCTTGTCAACGATTTTTAACTTGGTTTCTTCTTCAGAGATTAATAGAGGTGTGACTTGCCAGAGATTTGCGGAATTGGGTTTGGTTTCGCTCTTGTTGGAGGTCCTTGTTGATGCGGAAAGAGGGGCATGCGAGAAGGCTTTGGGGGTGTTGGATTGCGTTTGTGATTGCAAACAAGGGGTGCAGATGGCGAAGGCTAATGCTTTGACTTTGCCCCTTGTGATTAAGAAGCTCTTGAGGGTGTCTGAGCTGAGTTCCAGCTTTGCGGTTTCCATTCTTTGGCGGCTTTGTGACAAGACAGAAGAAGGGGTGTTGATTGAGGCGCTTCAAATGGGGGTGTTTCACAAACTCCTTCTTTTGTTGCAAGTGGGTTGTGGTGAGAGCACAAAAGAGAAGGCTACTGAGTTGTTGAAGTTGTTGAATGGTTGCAGGAACAAAGCCGAGTGTATTGATTCATCGTTAGATTTCAAGCACTTGAAGAAGCCCTTCTAA 1308 0.5038 MVLSWTRGRVFRRARKGKELNSGGDLEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELTSVDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTPYEVTDACTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVANGAALAMANAFDCFSRGVVEENVVVLDEILGALTWMRPLPDEGRSVLGSASSIGCMVWFLNGKQLSTRQNAALLLKEMRVEALLKSVGVFEALVNMIKEPVGPASTKACLSTIFNLVSSSEINRGVTCQRFAELGLVSLLLEVLVDAERGACEKALGVLDCVCDCKQGVQMAKANALTLPLVIKKLLRVSELSSSFAVSILWRLCDKTEEGVLIEALQMGVFHKLLLLLQVGCGESTKEKATELLKLLNGCRNKAECIDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2846 435 SUPERFAMILY ARM repeat 129 415 IPR016024 -
Ssu6g2846 435 CDD RING-Ubox_PUB 36 77 IPR045210 -
Ssu6g2846 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Ssu6g2846 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Ssu6g2846 435 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 435 - -
Ssu6g2846 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Ssu6g2846 435 PANTHER WDSAM1 PROTEIN 7 435 IPR045185 GO:0061630
Ssu6g2846 435 Gene3D - 125 426 IPR011989 -
Ssu6g2846 435 SUPERFAMILY RING/U-box 28 108 - -
Ssu6g2846 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2846 Ssu-Chr6 66018126 66019433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2846 27 435 U-box Gene Family AT5G37490 47.242 1.63e-123 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2846 - - gmx:100795913 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1431 9 49326183 49327097 Ssu6g2846 6 66018126 66019433 PCT