Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2845 atgaagaagaagagcagCACCCCCCTGATAAACCCTCTAGCCTTGGTCATTTTCCACACCGCGGCCCTCTTGGCTAACTCCCAAGATGACACCTCCGTAATGCTGGCCCTCAAGAACAGCCTCAATCCGCCGGGGTGGTCCGACCCGGACCCGTGCAAGTGGGACCACGTGAGATGCTCCGACGATAAACGGGTCACCCGGATCCAAATCGGGCGTCTAAACCTCCAAGGCACGCTCCCTGGAACCCTCCAGAACCTGACCCAGTTGCAGCACTTGGAGCTCCAATACAACAACATCTCCGGCCCCCTCCCCTCCCTCAACGGCCTAACCAACCTCCAAGTCTTCATGGCCAGCAGCAACAGCTTCTCCGCCGTCCCCGCCGACTTTTTCGCCGGCATGTCGCAGCTCCAGGCTGTTGAGATCGACAGCAACCCCTTCGAACCTTGGGAGATTCCTCAGAGTCTCCGAAACGCCTCCGCGCTTCAGAACTTCTCTGCCAACTCCGCCAACATTAGAGGCACCGTTCCGGATTTCTTCAGCTCCGAGGTGTTCCCTGGCTTGACCCTTTTGCATTTGGCCTTCAACAACCTCGAGGGAGGGTTGCCCTCGAGCTTCTCTGGGTCGCAGATTCAGTCATTATGGTTGAATGGACAAAAGAGTGATAACAAGTTCGGTGGCGGTGTTGATGTTTTAGGGAACATGACCTTTTTGACTGAGGTTTGGTTGCATTCTAATGCTTTCACGGGTCCTTTGCCGGAATTTTCTCGTTTGAAGAGTTTGCAGGTTTTGAGTTTGAGGGATAACAGGTTTGCCGGTCCTGTTCCGGGTTCCTTGGTGGGTCTTAAGTCGCTTAAGGTTGTGAACTTGACTAATAACCTTTTTCAGGGTCCAATGCCTGTGTTTGGTGATGGGGTTGAGGTGGATAATGCCAAGGATTCAAATAGTTTTTGCTTGCCGGGTCCTGGTGATTGCGATCCCAGGGTGGAGGTTCTCCTTTCTGTTGTTGGACTTATGGGTTATCCTCAAAGGTTTGCTGAGAGTTGGAAGGGAAATGATCCTTGTGTTGATTGGATTGGGATAGCTTGTAGCAATGGGAATATAACTGCTGTTAATTTTCAGAAAATGGGACTTACTGGTGTGATATCCCCAGAGTTTGCTAAGCTCAAATCATTACAAAGGATAGTTCTCGCTGATAACAATCTCACCGGTTCGATTCCGGAAGAGCTTGCTACTTTGCCTGTACTTACTCAATTGAATGTTGTGAACAATCGGCTTTATGGGAAGGTGCCGAGTTTTAGGAGTAATGTAGTAGTGAGTACAAGTGGTAACGTTGATATAGGGAAGGATAGGAGCAGTCAGTCCCCTCAGGGTTCAGTGTCTCCAAAAGTTCCCAATGCAAAGGGAGGAAATGGTGGAGGTTCTGGAGATGGTGGCAAAAAGTCTTCTTCCCATGTAGGTGTAATTGTGTTTTCAGTGATTGGGGCAGTGTTTGTGGTTTCGATGATTGGTTTCTTGGTTTTCTGTTTGATTAGGATGAAGCAAAAGCAGTTGAGTAGGGTCCAGAGCCCAAATGCGCTAGTTTTTCATCCAAGGCATTCTGGATCAGATAATGAAAGTGTGAAGATAACGGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACGCAAACCATGCCCGGCAGTGAGGCAGGAGACATTCAAATGGTTGAAGCGGGAAACATGGTCATTTCCATACAAGTCCTGAAGAATGTCACTGACAATTTCAGTGAGAAGAATATATTGGGACAAGGGGGTTTTGGAACAGTTTATAAAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATAACTGGGAAGGGTGCGGTGGAATTCAAGTCCGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTTGTTGCTCTTCTTGGGTACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGAACACTAAGCAGGCATCTTTTTAACTGGCCAGACGAAGGACTGGAGCCACTGGAGTGGAATAGAAGATTAACCATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACCGGGACTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTGCGTCTTGCTCCAGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACTTTTGGATATTTGGCGCCAGAGTATGCAGTTACTGGCCGTGTGACAACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATAACAGGAAGAAAAGCGCTTGATGAGACCCAACCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTCATTCCGCAAGGCCATTGACCCCGCAATCGAGCTCAACGAGGAAACGCTCGCGAGTATTCACACCGTAGCAGAGTTAGCCGGCCACTGCAGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTGGAACTCTGGAAACCATCTGATCAGAATTCTGAAGATATATATGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTGAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGACTCGTCGTCATCTTCATCTCTTCTTCCGAGCTTGGATAACACACAAACAAGTATACCTACTCGCCCATATGGATTTGCTGATTCTTTCACATCAGCAGATGGTAGGTGA 2835 0.4787 MKKKSSTPLINPLALVIFHTAALLANSQDDTSVMLALKNSLNPPGWSDPDPCKWDHVRCSDDKRVTRIQIGRLNLQGTLPGTLQNLTQLQHLELQYNNISGPLPSLNGLTNLQVFMASSNSFSAVPADFFAGMSQLQAVEIDSNPFEPWEIPQSLRNASALQNFSANSANIRGTVPDFFSSEVFPGLTLLHLAFNNLEGGLPSSFSGSQIQSLWLNGQKSDNKFGGGVDVLGNMTFLTEVWLHSNAFTGPLPEFSRLKSLQVLSLRDNRFAGPVPGSLVGLKSLKVVNLTNNLFQGPMPVFGDGVEVDNAKDSNSFCLPGPGDCDPRVEVLLSVVGLMGYPQRFAESWKGNDPCVDWIGIACSNGNITAVNFQKMGLTGVISPEFAKLKSLQRIVLADNNLTGSIPEELATLPVLTQLNVVNNRLYGKVPSFRSNVVVSTSGNVDIGKDRSSQSPQGSVSPKVPNAKGGNGGGSGDGGKKSSSHVGVIVFSVIGAVFVVSMIGFLVFCLIRMKQKQLSRVQSPNALVFHPRHSGSDNESVKITVAGSSVSVGGASETQTMPGSEAGDIQMVEAGNMVISIQVLKNVTDNFSEKNILGQGGFGTVYKGELHDGTRIAVKRMESGAITGKGAVEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPDEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDPAIELNEETLASIHTVAELAGHCSAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALEKWQAYEGRSQMDSSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2845 944 PANTHER OSJNBA0070M12.3 PROTEIN 14 944 - -
Ssu6g2845 944 SUPERFAMILY L domain-like 59 433 - -
Ssu6g2845 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Ssu6g2845 944 ProSitePatterns Protein kinases ATP-binding region signature. 596 618 IPR017441 GO:0005524
Ssu6g2845 944 CDD STKc_IRAK 596 869 - -
Ssu6g2845 944 SUPERFAMILY Protein kinase-like (PK-like) 568 874 IPR011009 -
Ssu6g2845 944 ProSiteProfiles Leucine-rich repeat profile. 88 110 IPR001611 GO:0005515
Ssu6g2845 944 Gene3D Ribonuclease Inhibitor 26 324 IPR032675 -
Ssu6g2845 944 MobiDBLite consensus disorder prediction 443 480 - -
Ssu6g2845 944 SMART serkin_6 590 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2845 944 Pfam Leucine rich repeat N-terminal domain 329 363 IPR013210 -
Ssu6g2845 944 Pfam Leucine rich repeat N-terminal domain 28 60 IPR013210 -
Ssu6g2845 944 ProSiteProfiles Protein kinase domain profile. 590 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g2845 944 MobiDBLite consensus disorder prediction 903 944 - -
Ssu6g2845 944 Pfam Protein tyrosine and serine/threonine kinase 593 818 IPR001245 GO:0004672|GO:0006468
Ssu6g2845 944 MobiDBLite consensus disorder prediction 904 933 - -
Ssu6g2845 944 Gene3D Transferase(Phosphotransferase) domain 1 668 888 - -
Ssu6g2845 944 Gene3D Ribonuclease Inhibitor 326 450 IPR032675 -
Ssu6g2845 944 PANTHER RECEPTOR PROTEIN KINASE TMK1 14 944 - -
Ssu6g2845 944 Gene3D Phosphorylase Kinase; domain 1 551 667 - -
Ssu6g2845 944 MobiDBLite consensus disorder prediction 443 463 - -
Ssu6g2845 944 SMART LRR_typ_2 388 412 IPR003591 -
Ssu6g2845 944 SMART LRR_typ_2 257 280 IPR003591 -
Ssu6g2845 944 SMART LRR_typ_2 86 108 IPR003591 -
Ssu6g2845 944 SMART LRR_typ_2 184 207 IPR003591 -
Ssu6g2845 944 SMART LRR_typ_2 109 132 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2845 Ssu-Chr6 65992625 65996191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2845 74 872 Receptor kinase-like Gene Family AT5G07280 30.889 2.50e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu6g2845 PK_Tyr_Ser-Thr 6.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2845 - K00924 aprc:113846741 1638.62