Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2844 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCATGTGCAGAATATGAATCTGAGGTTAGCAGCCAGGTTGCTTCCAATGTGTCTATTCAAGAAACCTCTGCAGGTCCTTGTAGTGACAGCCTCACTAACACTTCCAACATCACAAATCCAATAGGGTTTCATCCTAATTCAGATGCTGTTTCACTTGACTTAGCTCTCAACTTCAAAAATAGTGAGCCGGGGGCAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTGCCTCTCAAACTACAGCAGCAACCATTCCTCGAGTCTTCTCTTGCAATTACTGTCAGCGCAAGTTTTTCAGCTCCCAGGCTCTTGGGGGACACCAGAATGCacacaaaagagaaagaacattaGCAAAAAGGGCTATGAGAATGGGATTTTTCTCTGAAAGGTATGCCAGTCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGCATAAAGGCACACTCTTCACTGCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAACAATGCAAGATTTGATCAAGGGTATCTTGGCCTCCCAATATTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCTGGTAGTTTTCGTCAGGTTGCTGAGACAGGTGACAGTCATCAGAATTTCATACTGGCTGGAAgttcaaatttgagtttttctGGGGTGAATCCACCTGTAGACATAGAGAGCTCAACACCAGATTTGACTTTGAAACTTTGA 774 0.4238 MKPNFDLEVEACAEYESEVSSQVASNVSIQETSAGPCSDSLTNTSNITNPIGFHPNSDAVSLDLALNFKNSEPGARDSIGFSFSSTSESSNEPASQTTAATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEIKNNARFDQGYLGLPIFLEDDESDLLWPGSFRQVAETGDSHQNFILAGSSNLSFSGVNPPVDIESSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2844 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Ssu6g2844 257 Gene3D Classic Zinc Finger 84 151 - -
Ssu6g2844 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
Ssu6g2844 257 MobiDBLite consensus disorder prediction 79 98 - -
Ssu6g2844 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Ssu6g2844 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Ssu6g2844 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2844 Ssu-Chr6 65959808 65960581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2844 88 257 C2H2 Transcription Factor Family AT1G66140 53.061 4.12e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g2844 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2844 - - gmx:100794851 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1426 9 49270324 49271100 Ssu6g2844 6 65959808 65960581 PCT