Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2841 ATGACCTTGGAGGGGATTTTCATTGAGCCCACCTCAACTACTGCTCCTGATCTTTCCCTTCACATAAGCCCCCcaagcatctcctcttccttgatttccaataacaacaacaccacCAATTGTGAACCCCAAGGAAGTTTCCCTTATAGGATTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGGAATTTCACTTCTGGAGGGGAAATACCAACACCACACAACCCTTATTATCATCAAAGCCAAACCCATTTCCATCATCTTCGCCACAACAGCACTAGTGCTAGTTCTACAAGTACAACAAGTGTTGTTACTCGTACCAGTACTACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCATCAGATGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCAAAACCGTTCATTCCCTTTCGTAGCCATGGACCATGCTAGAGACAAGGATCACCATCACAAGATGTGCCTATATGGTCATCACATGCCTTCTTatccctctctctcttcttcttgttcctctCTGTGCTCCACTACtgctccttcttcttcttcaccttcACCTTTCTTTGCAGCGGGTGTGGATCCCGTGTCCCTCTTGAACAACGGCTCCACCGTGGCGTGTAGGGAAGCCACTGCTACAAGGTTTAATGGGTTTTATGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTTGGCAGCTCAGAAGCCTCTTCTGGGTTAATGAGATCAAGGTTTTTGCCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCACGCTCGATTTGTTCATGCGGTTGAACTTCTTGGTGGCCATGAaaGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGATTTGTCTCCGATGGGTAGCACCGCCGATCGCGGCAGTCTCCGGCAATTCCCCAACCACAGAGGGCGGCCGGAATGGGCAGCTCAACAAGACATGGACTACTCTTCCACCACCACTCTATGGAGTAATTCTTCAAGTTGTGGAGAGTCACGGCTACGAACTAGTTCTAACGACATAGATGGTCTCAGATCACCTATCCTCCAGTCACAAACAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACCCAACTCAAGAACAGCGTGCCAGGTTCTAATTTGGAGTGCAAGAACCCAAGCTTGGAATTCACATTAGGAAGACCAGATTGGAATGGCAAAGAACAAGCCTAA 1377 0.4415 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNNNNTTNCEPQGSFPYRIVSQAHTELSLGRNFTSGGEIPTPHNPYYHQSQTHFHHLRHNSTSASSTSTTSVVTRTSTTPLNHINYGVSLLDVSSSDGLRPIKGIPVYQNRSFPFVAMDHARDKDHHHKMCLYGHHMPSYPSLSSSCSSLCSTTAPSSSSPSPFFAAGVDPVSLLNNGSTVACREATATRFNGFYGDAFKSHPLHQYGVGSSEASSGLMRSRFLPKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPMGSTADRGSLRQFPNHRGRPEWAAQQDMDYSSTTTLWSNSSSCGESRLRTSSNDIDGLRSPILQSQTISGGHQIQECDSTQLKNSVPGSNLECKNPSLEFTLGRPDWNGKEQA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2841 458 Gene3D - 267 324 - -
Ssu6g2841 458 MobiDBLite consensus disorder prediction 324 402 - -
Ssu6g2841 458 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 458 - -
Ssu6g2841 458 SUPERFAMILY Homeodomain-like 265 321 IPR009057 -
Ssu6g2841 458 MobiDBLite consensus disorder prediction 371 402 - -
Ssu6g2841 458 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 458 IPR044847 GO:0000976|GO:0006355|GO:0010158
Ssu6g2841 458 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 268 321 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2841 Ssu-Chr6 65918438 65923477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2841 1 455 G2-like Transcription Factor Family AT5G16560 38.446 3.99e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu6g2841 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2841 - - gmx:100812229 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2841 6 65918438 65923477 Ssu6g2841 6 65918438 65923477 ECH