Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2834 ATGGTTCTCTCAAAAACCGCCTCCGAGACAGACATCTCTGTCCATTCAACCTTCGCCTCTCGCTATGTCCGCACCTCCCTTCCCAGGTTCAAGATGTCGGAGCAATCGATCCCCAAGGAAGCTGCGTACCAGATCATAAACGATGAGCTAATGCTAGACGGCAACCCCAGGTTGAACCTGGCGTCGTTTGTGACGACTTGGATGGAGCCTGAATGTGACAAACTCATCATGGCTGCCATTAACAAAAACTACGTTGACATGGACGAATACCCTGTCACCACTGAGCTCCAGAACCGGTGTGTTAACATGATAGCTCACCTCTTCAATGCACCACTTGAAGAGTCCGAACCTGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTGGCTGGGTTGGCATTCAAAAGGAGGTGGCAGAACAGAAGGAAACAAGAAGGGAAGCCTTATGACAATCCCAACATTGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCCGTGGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGCTCCACTCTGAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTCCTAGTGGAAAAGAATCAGGAAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCGCCTTTTCTTTATCCAGAGCTTGAGTGGGACTTTCGGTTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTAGTCTATGCTGGAATTGGTTGGGTCATCTGGAGAAGCAAGGAAGACCTTCCTGAGGAACTCATTTTCCACATTAACTATTTAGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTCATTCGATTGGGTTATGAGGGATATAAAATGGTGATGGAAAACTGCCGTGACAACATGATAGTGCTGAAGGAAGGACTAGAAAAAACAGGTCGGTTTGAAATTGTGTCCAAAGACATTGGTGTACCATTGGTGGCGTTCACTTTGAAGGACCGCAACCACTTTGATGAATTCCAAATCTCTGATATGCTGAGGCGCTTTGGTTGGATAGTGCCAGCATACACTATGCCCCCAGATGCACAACATGTGACAGTGCTACGTGTTGTGATTAGGGAGGACTTTTCTCGCACCCTTGCGGAGCGTCTTGTGATTGATGTCACCAAAGTGGTTCACGAGCTGGATTTGCTTCCTGCTAGGGTAATCAGCAGCAACACCATAACAATTACTGGAGAAGACGGTGCAGAAAATGGGGGCAAAGTGCTGGTTGCCAAGAAGAGTGAACTGGAGACCCAAAGGGAAATCACTTCAGCTTGGAAGAAGTTTGTGATGCAGAGGAAGAAGATGAATGGCGTTTGTTAG 1512 0.4716 MVLSKTASETDISVHSTFASRYVRTSLPRFKMSEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESEPAVGVGTVGSSEAIMLAGLAFKRRWQNRRKQEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNQETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKMVMENCRDNMIVLKEGLEKTGRFEIVSKDIGVPLVAFTLKDRNHFDEFQISDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVIDVTKVVHELDLLPARVISSNTITITGEDGAENGGKVLVAKKSELETQREITSAWKKFVMQRKKMNGVC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2834 503 Gene3D - 1 65 - -
Ssu6g2834 503 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Ssu6g2834 503 Gene3D - 361 448 - -
Ssu6g2834 503 CDD DOPA_deC_like 59 439 - -
Ssu6g2834 503 Gene3D - 66 360 IPR015421 GO:0003824
Ssu6g2834 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 - -
Ssu6g2834 503 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Ssu6g2834 503 PANTHER GLUTAMATE DECARBOXYLASE 1 503 IPR010107 GO:0004351|GO:0006536|GO:0030170
Ssu6g2834 503 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2834 Ssu-Chr6 65713955 65720367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2834 1 503 Calmodulin-binding Proteins AT5G17330 84.127 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2834 K01580 - gmx:100791696 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2834 6 65713955 65720367 Ssu6g2834 6 65713955 65720367 ECH
Ssu9g1411 9 49000669 49015302 Ssu6g2834 6 65713955 65720367 PCT