Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2829 ATGACGATACAAGGCCAAAATGCATTTACTAGATCACGGGGTGGTCTTCCAGTAGAAAATGGAATGTCTTTGGATTTGGGTGTGCATTCTGTTGCAGATATTCGACTACATGATCAGTTTTCTTGTGGAAGTGACTATGCCTTGAAGGTAAGGAAACCATATACCATCACAAAGCAGAGAGAGAGGTGGACGGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTCTATGGCAGGGCCTGGCGACGGATTGAagAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTCTTCGAGAGTCTAGTGGGAACAGTACGGCCTTGGAGGAATCAATTGAAATTCCACCTCCGCGACCAAAACGGAAGCCAATTCATCCTTACCCTCGTAAACTAGTTGAGATTCCAAAGAAAGAAATTTCCAACGCAGAACACCTACTGAGGTCTAATTCTGTTAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCTGTGTTATCTGCAGTTGTTTCAGAAACCCTTGGTTCCTCCGATTCAGATACACCTACTAGAAGTTTGTCACCAGTTTCATCCATTAGTGGTGTCCCCTCAAACAATTTTCCACTTGCTGAGCCCAGAACATCATTTGAGGAAGAAGGGTTTCCACCAAGTTCAGCTCATGATGAACAGCCTCTTGTGAAACTGGAGCTTTTTCATGAAGAAAGTGTCTCTACCAAAGATGATGCAGCAGAAGAATCATCTCGTCGTACTCTCAAACTTTTTGGGACCACTCTACTGATAACAGACACATGCAAACCTTCTTCTCTTACAACGGAGCCATGCAAACCAATACCTGCGGCTGCAGTGTATCTTATGCAACTACAGAATGGATGTTCAGATATTGCAGAAGGTCGTGCAGCTATTGTTCCTAGGTGGACTCTTCCCCACAATGCACCATTCATACCACTGCACAAAGAGCCAAAAGGGAAGCATATATATTCTAATCTTGGAGAGTTTGAACATACAGAAGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCATTTAATGATGGAGATAACACTGAAAAATCAGACGATCAAGCCAAGAGTCATGTGCATTGCTTTAGCAAAGGGGGTGAACAGTTGGACCTTTTTTATCACACTACACTAGGTGAAAAATCAACTATATCTGAGCTAAGGGTGAGACCTAAAACCTGTGGGAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAGAGAGAAAACCAGTACTCAACAGTAAGTGATGAGGAGAGGGAGGAGCAACGTATCAAGCTTTCCTTATAG 1350 0.4237 MTIQGQNAFTRSRGGLPVENGMSLDLGVHSVADIRLHDQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKILRESSGNSTALEESIEIPPPRPKRKPIHPYPRKLVEIPKKEISNAEHLLRSNSVKSSDFGQENNSPKSVLSAVVSETLGSSDSDTPTRSLSPVSSISGVPSNNFPLAEPRTSFEEEGFPPSSAHDEQPLVKLELFHEESVSTKDDAAEESSRRTLKLFGTTLLITDTCKPSSLTTEPCKPIPAAAVYLMQLQNGCSDIAEGRAAIVPRWTLPHNAPFIPLHKEPKGKHIYSNLGEFEHTEVQKEGSWTGSNTSSFNDGDNTEKSDDQAKSHVHCFSKGGEQLDLFYHTTLGEKSTISELRVRPKTCGKGFVPYKRCMAERENQYSTVSDEEREEQRIKLSL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2829 449 MobiDBLite consensus disorder prediction 349 377 - -
Ssu6g2829 449 SMART sant 59 107 IPR001005 -
Ssu6g2829 449 MobiDBLite consensus disorder prediction 351 366 - -
Ssu6g2829 449 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Ssu6g2829 449 PANTHER PROTEIN REVEILLE 7-RELATED 39 436 - -
Ssu6g2829 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Ssu6g2829 449 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Ssu6g2829 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Ssu6g2829 449 Gene3D - 62 108 - -
Ssu6g2829 449 MobiDBLite consensus disorder prediction 116 143 - -
Ssu6g2829 449 MobiDBLite consensus disorder prediction 125 143 - -
Ssu6g2829 449 PANTHER SWI/SNF COMPLEX-RELATED 39 436 - -
Ssu6g2829 449 MobiDBLite consensus disorder prediction 183 216 - -
Ssu6g2829 449 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Ssu6g2829 449 MobiDBLite consensus disorder prediction 183 233 - -
Ssu6g2829 449 CDD SANT 62 105 IPR001005 -
Ssu6g2829 449 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2829 Ssu-Chr6 65576973 65579671 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu6g2829 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2829 - - gmx:778060 727.243