Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2824 ATGGCACCTGTTTTGCCTCCCGGTTTCAGGTTCCACCCTActgatgaagaacttgttgctTATTACCTTAAAAGGAAGATCAATGGCCGAAAGATTGAGTTGGAGATCATACCTGAAGTTGATCTCTATAAGTGTGAACCATGGGACTTGCcagggAAATCATTGTTACCGGGAAAGGATTTGGAGTGGTATTTCTTTGGCCCTCGTGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACCAAATCTGGATATTGGAAGGCCACAGGGAAGGATAGGAAAGTGAATTCCCAGGCTCGGGCCGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCACATGGCTCTCGTTCAAATTGGGTCATGCATGAATATCGTCTTGATGAGAGAGAATGCGAAACCGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGCAGTGATTACTCCAAAAGTCGGGGGGCACTGTGTTAATTTTCCCAATGCCAACCAGATTACAAGCGATCAATCATCAAGCATTGAACTATACTCCGAAGGAAGGGGCGAAGATTTAGATAGCTCAAATTATTTGATGCCGATGGGTAATTGCTCACCCCACAACGTGGAAAATGAGACTTCTCTCACTATCAATGGTGGGACAAGGGATCATGGGGAATGGTCACACTTCTCATCAGAAGACCCATCATTATTTAGTCTTCCAACTTCTTCATTTCCTAATTTTGGGGCCATAACATACCCTCCATCCAAGGTGGATATAGCACTTGAGTGTGCAAGGATGCAGCATAGGTTTGCTATGCCTCCTTTGGAGGTGGATGACTTCCCTCAAGTTGGAATCTCAGAGCTGAAAATGACACAAGCCTCCGGTTCCATGCAAGGAAGCAGATCTGAAACGGATATCCTGCAGGAAATTCTTTCAGTTGCTCATGCTTCTCaggaattaataaatcaatCCAGCTACTCACAGGAATGGGGTGGCAATGATAATTATGCTCCTCGTGAAGATGATTTTACCTTCATGGTTGGCACTAATTACAATCATTTAAATGAAATGAGCTCAATGAGGTATGTTGACAAAACATGGGAAGACGCAAACACAAGGGCAATAGAGATCGGAGATATGAATGAAGAATATAGGGCAGAGAGAATGGTAGAGAACTTAAGATGGGTTGGAATGTCAAGAGAAGATTTAGAAAAgATGGAAGAACAAAAGATTGTCCCAATAGAGGATATTTCAAGCTTCCAAACTAACAGGGAAGAAAATGAGGTGCAAGAATCTGAGCAACATAGCAACAAGGAACACAATGACACTGAAATCAACGATTTCTCATTGGGCTTCATCAATGATGATGACCCTAACGAGAACTGCATAGAAGATGGTAACGTGGATGATTATTCAAGTTCTCCTAGCTTTGAGGTCGTTGAGGAAATAAAGATCAATCATGGAATGCTTGTTTCAACTCGTCAAGTAGCCGAGACATTCTTCCACCAAATAGTTCCTTCACAAACCGTCCAAGTTCACCTCAATTCAGTGATGGCAAACAATGATTACGTAGAGAATGCAGAGGCAGTGCTAATGATAATGGAGAACCAAGGGTCTTTGTTAAGGAAGGTTAAGGCCTATGTGATGGGGAAACTAATAAAGCCATCAAAGAAAATAGCAAGTGCGATTGTGTTCGTCTTTGCACTTGTGTTGATGCATTGTGTTTACTTGAAGGAAGAAGTGGAAATTTGGAATGAGACATGTTGTGGTAGTACTACCAGCATGAAGAGAATGAGTCAATCAAATGAGGTTTGGTTTGTTGGTGTCAAAAGTGAGAAAGGATTAAGTGCGGTCTTGAAGAAAATAGGCATTTTTCTCACCATATCTTTGGCTCTTTGTACCATGTGGGCTAACCAGAATATGATAGTTAACCCTTGA 1950 0.4144 MAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFGPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRSNWVMHEYRLDERECETASGLQDAYALCRVFKKTAVITPKVGGHCVNFPNANQITSDQSSSIELYSEGRGEDLDSSNYLMPMGNCSPHNVENETSLTINGGTRDHGEWSHFSSEDPSLFSLPTSSFPNFGAITYPPSKVDIALECARMQHRFAMPPLEVDDFPQVGISELKMTQASGSMQGSRSETDILQEILSVAHASQELINQSSYSQEWGGNDNYAPREDDFTFMVGTNYNHLNEMSSMRYVDKTWEDANTRAIEIGDMNEEYRAERMVENLRWVGMSREDLEKMEEQKIVPIEDISSFQTNREENEVQESEQHSNKEHNDTEINDFSLGFINDDDPNENCIEDGNVDDYSSSPSFEVVEEIKINHGMLVSTRQVAETFFHQIVPSQTVQVHLNSVMANNDYVENAEAVLMIMENQGSLLRKVKAYVMGKLIKPSKKIASAIVFVFALVLMHCVYLKEEVEIWNETCCGSTTSMKRMSQSNEVWFVGVKSEKGLSAVLKKIGIFLTISLALCTMWANQNMIVNP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2824 649 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Ssu6g2824 649 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Ssu6g2824 649 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Ssu6g2824 649 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Ssu6g2824 649 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 399 - -
Ssu6g2824 649 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 399 - -
Ssu6g2824 649 MobiDBLite consensus disorder prediction 430 449 - -
Ssu6g2824 649 MobiDBLite consensus disorder prediction 420 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2824 Ssu-Chr6 65500125 65504315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2824 1 639 NAC Transcription Factor Family AT1G65910 43.259 3.18e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g2824 NAM 4.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2824 - - gmx:100809019 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2824 6 65500125 65504315 Ssu6g2824 6 65500125 65504315 ECH