Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2822 ATGGAGCAGAAACAACAAAGCCTTGAAAGCTTCTTAACATGGGCAGCACaacttggaatatcagactcaACAAGCACCAACCAACCTCAACACTCTCTTTCCTCATGTTTGGGTTCTTCTCTATGTGTCTCTCATTTTCCTCACTCTGGCGGGAGAGGCTTGGGTGCTGTGAGAGACCTTAGGAGGGGAGAAATTGTTCTGAGAGTTCCAAAATCTGCTTTGATGACAAGAGAGAGTGTTATGGAAGATAAAAAGCTCTGTGTTTCTGTCAATAGGCACTCTTCTCTCTCCTCAGCTCAGATATTAATTGTGTGCTTGTTATATGAAATGGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTTGTGCATTTGCCGCACAGTTATGACGTACTAGCGATGTTTGGTGAATTTGAGAAACGTGCTTTGCAAGTGGATGAGGCGATATGGGTCACTGAAAAAGCTATACTGAAAGCCAAATCAGAGTGGAAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAAGCCCcagtttttaacatttaaggCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGGACATTGCATATACCGTGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCGCCTGGAGAGGAGCCACCTGGCATTGAGGATTTAGAGCATTTGCTATCTAACTCTTCCATCCATGATACTATCTTATCGAATGGAGACAAGAATATAATGGTGGATGCAGAACAGCTTGATTGTCATTCTCAGAGATTAACAGATGGTGGGTTTGAGGAAGATGTTAATGCATATTGCTTTTATGCTAGGGCACAGTACAAGAAAGGAGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCTTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGATCCTGCTGTATATTCTTCCACTTCATGGTCTAAGGAATCACTCTATATCCATCATAATGGGAAGCCTTCCTTTGCACTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAATAAGAGGAGGTCTTTTGGACATCTTGTCTATTCTGGTTCTCAGATTTCTTCAGACAATGAAATTTTCATCATGAAATGGCTGTCAAAAACTTGTGATGCTGTGTTAAAGAATCTGCCAACATCTATTGAGGAAGACACCTTGCTCCTGAATGCAATGGATAATAGTCAGGATTTTTCTACTTTCATGGAGATCACAAGGTTAATGTCTTCCAGGGATGAGATTTTTACCTTCTTAGAAGCACGTAACATGAAGGATAAACATAGTTTTACTGACGTAATTTTAACTAGAAAAGCAAGAAGGTCCATGGACAGGTGGAAATTAGCTGTCCAATGGAGGCTCAGATATAAGAAAGTCCTTTTTGATTGTATCTCTTATTGCAATGAAATACTGGATTCTTTCATGAAATAA 1491 0.3977 MEQKQQSLESFLTWAAQLGISDSTSTNQPQHSLSSCLGSSLCVSHFPHSGGRGLGAVRDLRRGEIVLRVPKSALMTRESVMEDKKLCVSVNRHSSLSSAQILIVCLLYEMGKGKTSRWHPYLVHLPHSYDVLAMFGEFEKRALQVDEAIWVTEKAILKAKSEWKEAHALMEDLMFKPQFLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPPGIEDLEHLLSNSSIHDTILSNGDKNIMVDAEQLDCHSQRLTDGGFEEDVNAYCFYARAQYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLDPAVYSSTSWSKESLYIHHNGKPSFALLAALRLWATPQNKRRSFGHLVYSGSQISSDNEIFIMKWLSKTCDAVLKNLPTSIEEDTLLLNAMDNSQDFSTFMEITRLMSSRDEIFTFLEARNMKDKHSFTDVILTRKARRSMDRWKLAVQWRLRYKKVLFDCISYCNEILDSFMK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2822 496 SUPERFAMILY SET domain 7 313 IPR046341 -
Ssu6g2822 496 Pfam Rubisco LSMT substrate-binding 343 480 IPR015353 -
Ssu6g2822 496 Pfam SET domain 51 295 IPR001214 GO:0005515
Ssu6g2822 496 Gene3D - 325 495 IPR036464 -
Ssu6g2822 496 CDD SET_LSMT 50 309 - -
Ssu6g2822 496 ProSiteProfiles SET domain profile. 39 295 IPR001214 GO:0005515
Ssu6g2822 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 481 - -
Ssu6g2822 496 Gene3D set domain protein methyltransferase, domain 1 4 309 - -
Ssu6g2822 496 PANTHER PROTEIN SET DOMAIN GROUP 40 5 481 - -
Ssu6g2822 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 487 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu6g2822 SET 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2822 - - gmx:100787452 910.983